Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02704 ATGGCCTTAAACCGATGCGTCGTTCTTAGTCACTCACTTTTTCACTATCGTCGTCCTCCTCCTCCTCCATTTTTCTCATCTGCTCTGCGTTCGACCTCCTCATCAATGGAAGCTCCTCCCGAAGGTTACCGCAAAAACGTTGGCATTTGCCTCATCAATCCGTCTAAAAAGATTTTTGCTGCCTCAAGGTTGGATATACCAGATGCCTGGCAAATGCCTCAGGGCGGCGTGGACGAGGGTGAAGATCCAAGAAGTGCAGCCATTAGAGAACTTAGAGAAGAAACAGGAGTCAAATCCGCAGACATTATTGCTGAAGTACCTTATTGGGTGACTTATGATTTCCCACCACATGTTCGGGAAAAACTTAGGCAGCAGTGGGGTTCTGACTGGAAGGGTCAAGCGCAGAAGTGGTTTCTGCTGAAGCTGACCGGAAGTGATGAAGAGATCAATCTTCTAGGTGATGGGACCGAAAAACCCGAGTTTGGCGAATGGTCATGGATGTCACCTGAAGATGTAGTAGAAAGTGCTGTAGATTTCAAGAAACCTGTATACAAGGACGTGCTAACGGTATTCAAACCCCATCTCGAGTAA 591 47.21 MALNRCVVLSHSLFHYRRPPPPPFFSSALRSTSSSMEAPPEGYRKNVGICLINPSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVKSADIIAEVPYWVTYDFPPHVREKLRQQWGSDWKGQAQKWFLLKLTGSDEEINLLGDGTEKPEFGEWSWMSPEDVVESAVDFKKPVYKDVLTVFKPHLE* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27853470 27856708 - CsaV3_5G035230.1 Csa05g02704 531091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02704 196 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 32 195 - -
Csa05g02704 196 ProSitePatterns Nudix box signature. 75 96 IPR020084 GO:0016787
Csa05g02704 196 CDD Ap4A_hydrolase_plant_like 42 191 IPR022927 -
Csa05g02704 196 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 17 195 - -
Csa05g02704 196 Pfam NUDIX domain 43 186 IPR000086 -
Csa05g02704 196 ProSiteProfiles Nudix hydrolase domain profile. 42 189 IPR000086 -
Csa05g02704 196 Hamap RNA pyrophosphohydrolase [rppH]. 37 196 IPR022927 -
Csa05g02704 196 PANTHER NUDIX HYDROLASE 26, CHLOROPLASTIC 17 195 - -
Csa05g02704 196 SUPERFAMILY Nudix 39 194 IPR015797 -
Csa05g02704 196 PRINTS NUDIX hydrolase family signature 70 84 IPR020476 -
Csa05g02704 196 PRINTS NUDIX hydrolase family signature 84 99 IPR020476 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02704 - - - csv:101206740 392.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03484 Csa-Chr3:31212482 Csa05g02704 Csa-Chr5:27853470 1.63E-41 dispersed
Csa05g01067 Csa-Chr5:10696031 Csa05g02704 Csa-Chr5:27853470 4.15E-70 dispersed
Csa05g02704 Csa-Chr5:27853470 Csa07g00247 Csa-Chr7:1951065 2.92E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93