Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02705 ATGGGTGTTCCTGCAACTGCAACTGCAGCTTTGGGGGATGATTTTCTCAGAGAAAGAGCGGCTAAGATGAGAGAATCACTGCAAAAGAGCCAAACTATTACTGATAACGTTGTCACCATTCTTGGCTCCTTTGACCACCGTCTTTCTGCTCTCGAAACCGCCATGCGCCCTACTCAGATCAGAACTAATTCAATTCGTAAAGCTCACGAAAACATTGATAAGACTTTGAAGTCTGCGGAGGTTATTTTAACACAATTTGATCTCTCTCGTCAGGCAGAAACAAAAATACTTAGAGGGCCACATGAGGATTTGGAAAGTTATCTCGGGGCGATTGGTCAATTAAGAAACATTATCAAATTTTTTAGCAGCCATAAAGGTTTTAAGAGTAGCGAGGTAGTGCTTAACCAGGCAAATAATCTGCTTGCAAAAGCAATCTCAAAGCTGGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGCAAACCTGTGGAGCCTGAGCGTCTTTTCGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGATTCTCCTGGTCATGATTCAGGTGGAAAGAATCATCATTCTGCTCATCATGATAATAGCTTAGAGACTGCTGTCTACACACCTCCCACTCTCATACCACCACGAGTTCTACCACTGCTGCATGATTTATCACAGCAAATGGTTCAAGCTGGTCATCAACAACAAATTTTAAAAGTTTATAGGGACACCCGTTCAGTTGTCCTGGAAGAAAGCCTACGGAAATTAGGAGTTGAAAAACTTAGCAAAGAGGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTTAAACTGCTATTTGCTGGTGAACGAAAAGTTTGTGACCAAATATTTGAAGGCTTTGAGTCACTTAGAGATCAATCATTTGCAGAGGTTACAAGTAGTAGTGTTTCTGTGCTATTCAGTTTTGGGGAGGCGATTGCAAATAGCAAGAGGTCACCAGAAAAGTTGTTTGTACTTCTGGACATGTATGAAATTATGCGAGAGCTTCACTCTGAGATAGAGACAATTTTTAAGGGTAAAGCATGCAGTGAGATCAAGGAATCTGCATCGAGTCTGACCAAACGGCTTGCACAGACAGCTAAGGATACATTTGGTGATTTTGAGGTAGCTGTTGAAAAAGATGCCACAAAAACTGCGGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATCAATTACGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAGCTTTTCCAAGAATTTGAAGATAGTGGTCAAACGAATTCAGAATTGGCCAGTGTCACAATGCAAATAATGCAGGCTCTTCAGTCTAATTTGGATGGAAAATCTAAGCATTACAGAGATCCTGCTTTGACTCACTTATTCCTCATGAACAACATACACTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTGGGGGACGATTGGGTTCAGAGACATAGGAGGGTCGTACAACAACATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATCCTGCAATGCCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGCGTACCAGGTATAGATGGAGGAAATAGTAGCGGTGTTTCTAAGGCACTTATTAAAGACAGGTTCAAGACTTTCAATATGCAATTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCTGATACTGAGTTGCGGGAGTCTCTAAGACTTTCGGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTGAAACGTTTTGGGCCACTGATTGATGGTGGAAAGAATCCCCAAAAGTACGTCAGATACCAGCCAGAGGATCTCGAAAGGATGCTGGGAGAATTTTTTGAAGGGAAGAATGTGAATGAACCTAAACGGTAA 1956 41.77 MGVPATATAALGDDFLRERAAKMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKSAEVILTQFDLSRQAETKILRGPHEDLESYLGAIGQLRNIIKFFSSHKGFKSSEVVLNQANNLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSDSPGHDSGGKNHHSAHHDNSLETAVYTPPTLIPPRVLPLLHDLSQQMVQAGHQQQILKVYRDTRSVVLEESLRKLGVEKLSKEDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIANSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACSEIKESASSLTKRLAQTAKDTFGDFEVAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTNSELASVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRNAWSKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSKALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNVNEPKR* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27858578 27865729 + CsaV3_5G035240.1 Csa05g02705 531092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02705 651 Pfam Exo70 exocyst complex subunit 279 638 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa05g02705 651 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 40 647 - -
Csa05g02705 651 PANTHER EXOCYST COMPLEX PROTEIN EXO70 40 647 IPR004140 GO:0000145|GO:0006887
Csa05g02705 651 Coils Coil 134 154 - -
Csa05g02705 651 Gene3D Exocyst complex component Exo70 80 651 - -
Csa05g02705 651 SUPERFAMILY Cullin repeat-like 82 642 IPR016159 -
Csa05g02705 651 MobiDBLite consensus disorder prediction 172 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02705 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101206262 1247.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02774 Csa-Chr3:26573177 Csa05g02705 Csa-Chr5:27858578 1.51E-125 dispersed
Csa04g00918 Csa-Chr4:6741979 Csa05g02705 Csa-Chr5:27858578 6.19E-94 dispersed
Csa05g01620 Csa-Chr5:19199254 Csa05g02705 Csa-Chr5:27858578 2.54E-105 dispersed
Csa05g02705 Csa-Chr5:27858578 Csa06g02721 Csa-Chr6:23807554 0 dispersed
Csa06g02722 Csa-Chr6:23824017 Csa05g02705 Csa-Chr5:27858578 2.25E-99 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g774 . . . . . . . . . Cmo04g01515 . Cma18g00955 Car04g01504 Car18g00872 . . Cpe09g00367 . . . . . . . Cla05g02225 Cam05g2389 Cec05g2404 Cco05g2453 Clacu05g2379 Cmu05g2244 Cre05g2361 Cone1ag1422 Cone5ag0416 Cone11ag0966 . . . Chy10g01231 Cme10g00165 . . . . . . . Bma08g00906 . . . . . . . Cpe01g01290 . . . . . . . . . . . . . . . Lsi04g00159 Csa05g02705 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02705 . 14 652 EXO70 exocyst subunit family AT5G03540 76.7 1.0e-285 979.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G03540 70.7 6.0e-265 910.2
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G03540 68.9 8.8e-168 587.4
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G03540 74.7 5.3e-72 269.2
Csa06g02721 . 1 639 EXO70 exocyst subunit family AT5G52340 79.8 1.9e-297 1018.1
Csa05g02705 . 16 652 EXO70 exocyst subunit family AT5G52340 74.4 1.1e-271 932.6
Csa06g02723 . 1 421 EXO70 exocyst subunit family AT5G52340 77.9 2.8e-187 652.1
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52340 80.2 7.8e-81 298.5
Csa06g02721 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.7e-175 612.8
Csa05g02705 . 151 652 EXO70 exocyst subunit family AT5G52350 60.6 5.4e-169 591.3
Csa06g02723 . 145 421 EXO70 exocyst subunit family AT5G52350 60.1 1.2e-88 324.3
Csa06g02722 CCT 1 182 EXO70 exocyst subunit family AT5G52350 64.3 2.0e-62 237.3
Csa01g02542 . 1 630 EXO70 exocyst subunit family AT5G58430 66.5 7.6e-246 846.7
Csa01g02542 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.3e-175 612.5
Csa04g00293 . 60 673 EXO70 exocyst subunit family AT5G13150 52.6 3.1e-173 605.5
Csa05g01620 . 93 705 EXO70 exocyst subunit family AT5G13990 54.3 4.1e-192 668.3
Csa03g02774 . 12 611 EXO70 exocyst subunit family AT1G72470 64.3 1.3e-213 739.6
Csa03g02774 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 3.9e-210 728.0
Csa03g02774 . 9 608 EXO70 exocyst subunit family AT3G14090 65.1 8.4e-221 763.5
Csa01g03408 . 14 651 EXO70 exocyst subunit family AT5G50380 61.9 5.6e-226 780.8
Csa01g00963 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 3.1e-224 775.0
Csa02g02314 . 13 683 EXO70 exocyst subunit family AT4G31540 73.1 4.5e-292 1000.3
Csa05g00661 . 58 601 EXO70 exocyst subunit family AT3G55150 51.7 2.2e-152 536.2
Csa05g00661 . 27 601 EXO70 exocyst subunit family AT2G39380 52.0 3.9e-157 552.0
Csa03g03213 . 27 632 EXO70 exocyst subunit family AT3G09520 54.3 4.0e-178 621.7
Csa06g01715 . 36 613 EXO70 exocyst subunit family AT5G59730 50.2 5.9e-153 538.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74