Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02741 ATGGAACAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTAGTTTACAAGGCACGCGATCGTGTCACCAATGAGACTATTGCTTTGAAGAAGATCCGTTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCTATTCGTGAAATTTCACTGTTGAAGGAAATGCAGCACGGCAACATTGTGAGGTTACAAGATGTAGTGCATAGCGAGAAGCGTCTGTATCTTGTTTTTGAGTACCTGGATTTGGATTTGAAGAAGCATATGGATTCATCTCCTGAATTTTCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTATCAAATTCTTCGTGGCATTGCATATTGTCATTCTCATAGAGTTCTTCACCGAGATCTAAAACCCCAAAATCTGCTGATTGATCGTCGTACCAATGCCCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACAGAGCACCAGAAATATTGCTTGGTTCCCGACATTATTCCACCCCCGTGGATGTGTGGTCAGTGGGTTGCATATTTGCTGAGATGGTTAATCAGCGACCGTTGTTCCCTGGAGACTCTGAGATTGATGAACTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTACTTTCCCCAAGTGGTCTCCCAAGGACCTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGAATTGATCTTCTCTCTAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAATGCCCTTGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTAA 885 43.39 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFSKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSTFPKWSPKDLASVVPNLEAAGIDLLSKMLCLDPTKRVTARNALEHEYFKDVGFVP* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28151896 28157609 - CsaV3_5G035600.1 Csa05g02741 531128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02741 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Csa05g02741 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Csa05g02741 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Csa05g02741 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Csa05g02741 294 PANTHER - 3 291 - -
Csa05g02741 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02741 294 PANTHER CELL DIVISION PROTEIN KINASE 3 291 - -
Csa05g02741 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Csa05g02741 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02741 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02741 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02741 Csa-Chr5:28151896 Csa03g03950 Csa-Chr3:34536277 1.90E-87 dispersed
Csa01g00416 Csa-Chr1:2598315 Csa05g02741 Csa-Chr5:28151896 9.82E-90 transposed
Csa02g00116 Csa-Chr2:814024 Csa05g02741 Csa-Chr5:28151896 6.37E-18 transposed
Csa02g02292 Csa-Chr2:20487955 Csa05g02741 Csa-Chr5:28151896 4.82E-28 transposed
Csa03g00109 Csa-Chr3:854120 Csa05g02741 Csa-Chr5:28151896 2.09E-71 transposed
Csa04g01158 Csa-Chr4:9986452 Csa05g02741 Csa-Chr5:28151896 2.99E-123 transposed
Csa04g02739 Csa-Chr4:26301211 Csa05g02741 Csa-Chr5:28151896 5.59E-122 transposed
Csa06g00868 Csa-Chr6:6969695 Csa05g02741 Csa-Chr5:28151896 4.52E-11 transposed
Csa05g02741 Csa-Chr5:28151896 Csa07g00931 Csa-Chr7:7979653 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78286 PF00069 Pkinase 7.40E-81 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02741 K02206 - csv:116405161 597.43