Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02744 ATGGCTTCTTTCTCCCTCATTGCGTTTTTCCTCTCCGGTTTAATCTTCTTCCTCACAAGAAAACCCATAAGAAACCGCCCTAATCTCCCTCCTGGACCGCCCGGTTGGCCCCTCGTCGGCAACCTCTTTCAAGTCGCCCTCTCCAAGAAACCCTTCTTCGAATACATTGAAGATCAACGCCGAATTTACGGCTCAATTTTTACCCTCAAAATGGGTCCTACAAAAATGGTTGTAGTGAGCGATTCGAATTTTGTTCACGAAGCACTAATTAAAAAAGGGGCGATTTTTGCTGACCGTCCCAGAGAAAATCCTACCCGGATTATATTCAGCAGTAACAAATTTTCCGTGAATGCGGCGGTTTACGGCCCTATATGGCGGTCCCTCCGCCGCAACATGGTGGAAAATATGCTCAGCTCCAGCAAGGTTAAGGAGTTCCGAGACGTGAGAGAAAAAGCAATGGAAAAATTTGTGAAGCGGTTAAGACGTGAAGCAGAGGATAATAACGGCGTCGTTTCAGTGCTTAAAAACGTGCGTTTTGCGGTGTTTTGGATTATGTTAACAATGTGTTTCGGAATCGAGATGGAAGACGAAACGGTTGTGAAAATGGACGAGATTTTGAAATCCGTATTGATCGCACTCGATCCAAGAATTGATGATTATTTCCCGATTTTATCTCCTTTTTTCTCTAGAGAAAGAAATCGAGCGAATCTCGTTCGGAGAAAACAAGTCGAATTCGTTGTTGAGTTAATTAATCGACGGCGGCGGGCACTGGAGAATCCAGCTTCCGACGGTGACGCGACGTCGTTTTCGTACCTGGACACGCTTTTCGATTTTAAAATCGACGGGCGTGGCGGCGAAGGGAAGTCGTCGTCGGCGACGGACGAGGAATTGGTGACACTTTGTTCGGAGTTTTTGAACGGCGGGACGGACACGACGGCGACAGTGATAGAATGGGGGATGGCGGAATTGATAGCGAATGAGGAAATTCAGAGGAAGATTGTGGAAGAAATTAAAGAGACGGTTGGTGAGAGAAAAGTAGAGGAGGAAGACGTTGAAAAAATGGTATATTTACAAGCAGTTGTGAAAGAAGTGTTGCGTAAACATCCTCCGACGTTCTTTGCTCTAACGCACTCCGTCACGGAGACGACGAAATTGGCAGGATACGACATCCCAAATGACACGAACGTAGAATTCTTCTTACCCGCCATCGGAAGAGATCCGAAGCTATGGAAGAATCCAGATAAATTCGAACCGGAAAGATTCTACTCCGGCATGGAAGAAGCCGATATTACCGGCGTCAGTGGCGTCAGAATGATGCCGTTTGGCGTAGGGCGGCGGATCTGCCCGGGCTTGGGAATGGCCACCGTCCACATTCATTTAATGCTCGCCAGAATGCTGCAGGAATTTGAATGGGCCGCCTATCCACCGTCCAGCTCCGTCGACTTTTCATGGAAGATGGAATTCACGGTCGTCATGAAGAATCCTCTTACGGCCGTTGTCGAACCTAGGGTTTAA 1515 47.59 MASFSLIAFFLSGLIFFLTRKPIRNRPNLPPGPPGWPLVGNLFQVALSKKPFFEYIEDQRRIYGSIFTLKMGPTKMVVVSDSNFVHEALIKKGAIFADRPRENPTRIIFSSNKFSVNAAVYGPIWRSLRRNMVENMLSSSKVKEFRDVREKAMEKFVKRLRREAEDNNGVVSVLKNVRFAVFWIMLTMCFGIEMEDETVVKMDEILKSVLIALDPRIDDYFPILSPFFSRERNRANLVRRKQVEFVVELINRRRRALENPASDGDATSFSYLDTLFDFKIDGRGGEGKSSSATDEELVTLCSEFLNGGTDTTATVIEWGMAELIANEEIQRKIVEEIKETVGERKVEEEDVEKMVYLQAVVKEVLRKHPPTFFALTHSVTETTKLAGYDIPNDTNVEFFLPAIGRDPKLWKNPDKFEPERFYSGMEEADITGVSGVRMMPFGVGRRICPGLGMATVHIHLMLARMLQEFEWAAYPPSSSVDFSWKMEFTVVMKNPLTAVVEPRV* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28178417 28181098 - CsaV3_5G035630.1 Csa05g02744 531131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02744 504 SUPERFAMILY Cytochrome P450 30 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 Pfam Cytochrome P450 30 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PANTHER CYTOCHROME P450 77A4 3 503 - -
Csa05g02744 504 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 3 503 - -
Csa05g02744 504 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Csa05g02744 504 Gene3D Cytochrome P450 23 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g02744 504 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00224 Csa-Chr4:1336755 Csa05g02744 Csa-Chr5:28178417 4.44E-25 dispersed
Csa05g02744 Csa-Chr5:28178417 Csa06g00409 Csa-Chr6:3567044 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02744 K21995 - csv:101217068 978.008