Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02772 ATGTTTCCTCGTGTTCTTACCACTCTCTTCATATGGATGGTTGCTTCTTCAATCTCTTGTGTCTCTTCGTCTTCTTTCAATCTTACATTACCCCATCAACATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCCGTATGGAGAAGACAAATGCTGTCCATCGAATCAAAGGATCAAACATTCTCTTGTCTCACCGGAAACCCCATCGACGATTGCTGGCGGTGCGACCCAAATTGGGCAGCTAACCGCCAGCGATTGGCCGACTGTGGTATAGGGTTCGGGCGAGACGCCATGGGTGGCAAAGGTGGAAAGATCTACATCGTTACCGACTCGTCCGATTTGGATCCGACGAACCCAACTCCGGGAACTCTCCGGCACGCTGTGATCCAATTCGAACCACTGTGGATCATATTCTCCGCCGACATGACTATAAGGCTGAAATACGAACTTATCATCAACAGTTTTAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGGGGATGTATCACCATTCAATATGTGTCGAATGTCATCATCCACAACGTCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAATATAAGATCGACTCCAACTCACGTGGGTCATCGAGGACTATCGGATGGAGATGGGATCTCAATATTTAGCTCGAGAAAGATATGGATCGACCATTGTTCATTGTCGTATTGTACCGATGGATTAATAGATGCAATAATGGGTTCGACGGGAATAACGATATCAAACAGCTACTTCTCGCACCATGACGAGGTGATGTTGTTGGGACATGACGATCGGTATGTGCAAGACTCGGGGATGCAAGTCACCATCGCCTTCAACCACTTTGGCGAGGCGTTGGTCCAACGTATGCCTCGATGTAGACATGGCTATATCCATGTCGTCAACAATGACTTCACTGCTTGGCAAATGTATGCCATTGGAGGTAGCGCTCAACCCACTATTAACAGTCAGGGTAATCGTTACACCGCTCCTGTGGACCCTAACGCCAAAGAGGTGACGAGACGTTTGGACGCGGCGGAGACAGAGTGGGCGGGGTGGAACTGGCGGACGGACGGCGATATTTTGGTGAACGGTGCGTTTTTTGTACCGTCCGGCGCCGGACTTAGCACCCAGTATGGTAAGGCATCCAGCGTGGAGCCTAAGTCGGTGGCTCTCATCAATCAACTCACTATGAACGCCGGCGTCTTGGGCGCTCCAAGGTATAATGGCGGTGAAGGAATTGTCTACCCAGGATTTAGCGGTGGAAGTGGTGGAAATGGTGATGAGGGATATGGGGGTAATACTGTTATCAATAATAGTCCAATTTATGAAAACGGTGGTGGTAGTGGTGGTTATGGTAATGGTAATGGTAATGATGACTACTTCGGAATGATATTTAAAGCTAACGGCCATAGAACATTTCCAATATTTTCCTCCCTAAACTACTTGTGTACTCTTCTAATTATATTCCTTTTGTATATAGTCACAAATTATAGCAGTACTTTATTATCTTTATAG 1548 47.67 MFPRVLTTLFIWMVASSISCVSSSSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSIESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPTNPTPGTLRHAVIQFEPLWIIFSADMTIRLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNVHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWQMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNGGEGIVYPGFSGGSGGNGDEGYGGNTVINNSPIYENGGGSGGYGNGNGNDDYFGMIFKANGHRTFPIFSSLNYLCTLLIIFLLYIVTNYSSTLLSL* 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28428196 28433740 + CsaV3_5G035910.1 Csa05g02772 531159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02772 515 SMART amb_all 147 344 IPR002022 -
Csa05g02772 515 Pfam Pectate lyase 156 336 IPR002022 -
Csa05g02772 515 Gene3D - 72 414 IPR012334 -
Csa05g02772 515 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Csa05g02772 515 PANTHER PECTATE LYASE 18-RELATED 7 431 IPR045032 GO:0030570
Csa05g02772 515 SUPERFAMILY Pectin lyase-like 62 391 IPR011050 -
Csa05g02772 515 PANTHER PECTATE LYASE 7 431 - -
Csa05g02772 515 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Csa05g02772 515 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Csa05g02772 515 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Csa05g02772 515 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Csa05g02772 515 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Csa05g02772 515 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Csa05g02772 515 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Csa05g02772 515 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01452 Csa-Chr4:14404195 Csa05g02772 Csa-Chr5:28428196 7.21E-48 dispersed
Csa05g01868 Csa-Chr5:21944533 Csa05g02772 Csa-Chr5:28428196 0 dispersed
Csa05g02772 Csa-Chr5:28428196 Csa06g02614 Csa-Chr6:23007604 0 dispersed
Csa02g01684 Csa-Chr2:16049973 Csa05g02772 Csa-Chr5:28428196 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02772 K01728 - csv:101205739 1024.23