Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02773 ATGGAGGGATTCAACATGAAATCCTTTACATTAAAACTAATCAAGGGTTCATGGTTCATGATGTTTGCATCGTTTCTAATCATGTCGATGGCGGGCATCCCGTACATGTTCGGTTTATACTCGAGCACCATAAAGACTGTATTAGGATACGACCAAACAACTCTAAACTTTATAAGTTTCTTTAAAGACGTTGGTACGACGGTTGGTGTCGTAGCTGGGTTAATCAACGAAGTAACTCCACCATGGTCGATTCTAGCCATGGGAGCTGCCCTCAATTTCTTCGGCTACTTCATGATTTGGCTATCCGTCTCGAAGAAAATCTCAACCCATGTTTGGTTAATGTGTCTCTACATCTGCGTGGGGGCGAACGCGACGACGTTTGCCAACACGGGGGCGTTGGTGACGTGCGTAAAGAACTACCCACAACGTCGGGGAGTGGTGATCGGTATACTGAAAGGGTACATGGGGTTGAGTGGGGCGATTGTGACGCAGTTGTATCATGCGATATATGGGAAAGACGAGAAGTCGTTGATACTGTTGTTGGGGTGGTTGCCGGCAGCAGTGTCGTTGGTGTTTCTGCCGACGGTGCGGCGGATGAAGGTGGAGCATGAGGAGGATGAGTTGAAGGTTTTTTATAGGTTTTTGTATATATCATTGGGATTGGCTGGGTTTTTGATGATTATGATAATTTTGCAACAGAAGTTTAGTTTTGACAGAGGGGAATTTGGAGGAAGTGCTGCGGTTGTTACGTTTTTATTGCTTTTGCCTATAGCGGTTGTTGTTGCTCAAGAGTTCAAGTCATGGCGTCGTTTGAATAAGCCGGCGGCTCTTGAAAATGGCATTTCTCCTTCTCCGGGTTCACCACCATTAAAGAACACAACACCAATATCACTTCTACCAAAGAAACCAAAATCTCAACAACAAGAACCCATCAAAACCGAGTGGTGGAAAAATGTGTTCAATCCCCCACCAAGAGGAGACGATTGGACCATCCTTCAAGCTTTGTTCAGCTTTGACATGTTCCTGCTCTTCCTCGCCACCGCCTGCGGCGTCGGTGGCACACTTACTGCCATCGACAATCTCGCTCAAATCGGTCAATCCCAAGATTACCCCAAAAAAAGCATCAGCACATTCGTTTCCCTCGTCAGTATCTGGAATTACCTCGGCCGAGTCATGGCCGGATTCCTCTCCGAACATTTACTAATCAAATACAAATTCCCTCGTCCTTTAATGCTCACAATCGTTCTTCTTCTTTCCTGCATTGCCCATCTTTTAATCGCCTTCAATCCTTCAGGCGGTCTTTACATCGCCTCTATTTTGACCGGATACTGTTACGGTGCTCAATGGCCTCTGCTCTTCGCCATTGTTTCAGAGATTTTCGGGTTGAAATACTACGCGACTCTCTACAATTTCGGATCGGTGGCTAGCCCAGTTGGGCTTTATTTGTTGAATGTGAATGTGGCTGGGTATTTATACGATAAGGAAGCGAAGAAGCAGTTGAGTATGGCGGGGAAGATTAGAAAAACAGGGGAGGAGTTGGTTTGTAATGGGACGGTATGTTTTAAGCTTTCGTTTGTGATTATTACTGCGGTGAGTTTGTTTGGAGCTTTGGTTTCTTTGGTTTTGGTGTTGAGGACTAAGAAATTTTATAAGAGTGATATTTACAAAAAGTTCAAAGAAGCAGAGGAGGCGGCGGCGGAAGAGGAAGAGGAGAAGAACGACGACGGCCGTGTGGTTAGAAATGGTGGCGGTGGTTTGATGGAGGAGACGAAACATGGTCTTAAGCAATGA 1791 45.62 MEGFNMKSFTLKLIKGSWFMMFASFLIMSMAGIPYMFGLYSSTIKTVLGYDQTTLNFISFFKDVGTTVGVVAGLINEVTPPWSILAMGAALNFFGYFMIWLSVSKKISTHVWLMCLYICVGANATTFANTGALVTCVKNYPQRRGVVIGILKGYMGLSGAIVTQLYHAIYGKDEKSLILLLGWLPAAVSLVFLPTVRRMKVEHEEDELKVFYRFLYISLGLAGFLMIMIILQQKFSFDRGEFGGSAAVVTFLLLLPIAVVVAQEFKSWRRLNKPAALENGISPSPGSPPLKNTTPISLLPKKPKSQQQEPIKTEWWKNVFNPPPRGDDWTILQALFSFDMFLLFLATACGVGGTLTAIDNLAQIGQSQDYPKKSISTFVSLVSIWNYLGRVMAGFLSEHLLIKYKFPRPLMLTIVLLLSCIAHLLIAFNPSGGLYIASILTGYCYGAQWPLLFAIVSEIFGLKYYATLYNFGSVASPVGLYLLNVNVAGYLYDKEAKKQLSMAGKIRKTGEELVCNGTVCFKLSFVIITAVSLFGALVSLVLVLRTKKFYKSDIYKKFKEAEEAAAEEEEEKNDDGRVVRNGGGGLMEETKHGLKQ* 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28438039 28440381 - CsaV3_5G035920.1 Csa05g02773 531160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02773 596 MobiDBLite consensus disorder prediction 565 596 - -
Csa05g02773 596 Pfam Nodulin-like 18 261 IPR010658 -
Csa05g02773 596 SUPERFAMILY MFS general substrate transporter 21 554 IPR036259 -
Csa05g02773 596 MobiDBLite consensus disorder prediction 279 305 - -
Csa05g02773 596 CDD MFS_Mch1p_like 18 536 - -
Csa05g02773 596 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 5 573 - -
Csa05g02773 596 Gene3D MFS general substrate transporter like domains 295 581 IPR036259 -
Csa05g02773 596 PANTHER MFS TRANSPORTER 5 573 - -
Csa05g02773 596 MobiDBLite consensus disorder prediction 285 305 - -
Csa05g02773 596 Coils Coil 551 571 - -
Csa05g02773 596 Pfam Major Facilitator Superfamily 340 547 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02773 Csa-Chr5:28438039 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa05g02773 Csa-Chr5:28438039 Csa05g02774 Csa-Chr5:28442948 2.53E-75 tandem
Csa04g02020 Csa-Chr4:20332608 Csa05g02773 Csa-Chr5:28438039 0 transposed
Csa02g01686 Csa-Chr2:16082223 Csa05g02773 Csa-Chr5:28438039 0 wgd
Csa03g03306 Csa-Chr3:30122257 Csa05g02773 Csa-Chr5:28438039 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02773 - - csv:101205503 1162.52