Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02780 ATGGTGGCCGACCGGAGAATCTCTGGTTGCTCTGACATAAGTAGCATCGGGGTCCACGTAATCACTGGACGGTGGTTCGTGGTGTTCGCTTCACTCCTAATCATGGCAGCGGCCGGAGCGACGTACATGTTCGGCTTGTACTCAAGCGACATAAAATCTGTTTTGGGTTACGACCAAACGACGTTGAATTTGCTGAGTTTTTTCAAGGACTTAGGTGCAAACGTCGGCGTTTTGTCTGGACTTATTAACGAGGTTACGCCGCCATGGGTGGTTCTATCTATCGGCGCCGTATTGAACTTCTTTGGTTACTTTATGATTTGGCTTGCCGTTACTCGTCGGATCTCTGCGCCTAAAGTTTGGCAGATGTGTCTCTATATTTGTATTGGAGCCAATTCTCAATCCTTTGCAAATACGGGTTCTCTCGTCACTTGTGTTAAGAACTTCCCTGAAAGCCGTGGAGTCGTTCTTGGTATCTTGAAGGGATACGTCGGGCTGAGCGGTGCCATTATCACACAACTCTTCCACGCATTCTACGGCGACGACACCAAATCCTTAATTCTCCTCATTGGATGGCTTCCGGCGGCCATTTCCTTCGCATCTTTACGCACAATTCGTATCATGAAAGTCATCCGTCAACCAAACGAGCTCAAAGTCTTCTACAACTTCCTCTACATTTCTCTTGCCCTCGCCGGATTCCTAATGCTAATGATCATTGTAGAAAGCAAAAAACAGTTCAATCAAAACGAATACGGTGGCAGCGCCGCCGTCGTCCTCCTTCTCCTCATCCTCCCACTTGCTGTAGTCATCATCGAAGAGTACAATCTCTGGAAACTCAAAACCGCTGTCATTAAATCCCCGAATCCCTCTGTTCAAATCGTAACAGAGAAACTCCCAAAAACAGAGCATCCAAAACAAGAGCGAAAAGAACCATCTTGTTGGACAACAATTTTCAGCCCACCACAACGTGGCGAGGATTTCACAATTCTTCAAGCTCTCTTCAGCGTCGACATGCTGATTCTATTTATCGCTGCAATCTGCGGTGTCGGTGGAACGTTAACAGCGATTGACAATTTGGGTCAAATCGGATTGGCTTTGGGATACCCAAAAAGAAGCATTAGCACATTTGTATCATTAGTCAGCATTTGGAATTACCTCGGTCGAGTTGCCTCTGGTTTCATCTCTGAAATTGTTTTGACAAAATACAAATTCCCTCGTCCTTTAATACTCTCTCTAACCCTTCTTCTGTCCTGTGTCGGCCATTTGATGATCGCATTTGACGTCCCAAATGGGTTATATGTAGCTTCCATCGTAATCGGATTCTGCTTTGGTGCACAATGGCCGTTGATTTTCGCCATAATTTCAGAGCTTTTTGGGTTGAAATATTACTCAACGCTTTACAATTTCGGGTCGGTCGCGAGTCCAATTGGGCTATATGTTCTGAATGTGAAAGTGGCTGGGAATTTCTATGACAGAGAAGCAGAGAAGCAGCTCGAAGCAAAAAGGATTATACGAAAAGCAGGGGAAGAATTAAAGTGCTTTGGAGGGGAATGCTTTAAGCTTTCATTCATCGTAATCACAGGAGTTACTTTATTGGGTATGTTAGTTTCATTGATTTTAGTAATTAGAACAAGAAGTTTCTACAAAAGTGATATTTATAAGAAGTTCAGAGATGAAGTTGAAACAACAGAGGTGGCCGGAAATGGGGTTGTAGAGGCCGCCGGTGTACCAGAAGAGAGAAGAAAATGA 1746 44.56 MVADRRISGCSDISSIGVHVITGRWFVVFASLLIMAAAGATYMFGLYSSDIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLAVTRRISAPKVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLFHAFYGDDTKSLILLIGWLPAAISFASLRTIRIMKVIRQPNELKVFYNFLYISLALAGFLMLMIIVESKKQFNQNEYGGSAAVVLLLLILPLAVVIIEEYNLWKLKTAVIKSPNPSVQIVTEKLPKTEHPKQERKEPSCWTTIFSPPQRGEDFTILQALFSVDMLILFIAAICGVGGTLTAIDNLGQIGLALGYPKRSISTFVSLVSIWNYLGRVASGFISEIVLTKYKFPRPLILSLTLLLSCVGHLMIAFDVPNGLYVASIVIGFCFGAQWPLIFAIISELFGLKYYSTLYNFGSVASPIGLYVLNVKVAGNFYDREAEKQLEAKRIIRKAGEELKCFGGECFKLSFIVITGVTLLGMLVSLILVIRTRSFYKSDIYKKFRDEVETTEVAGNGVVEAAGVPEERRK* 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28460136 28462503 - CsaV3_5G035990.1 Csa05g02780 531167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02780 581 Pfam Nodulin-like 24 269 IPR010658 -
Csa05g02780 581 Gene3D MFS general substrate transporter like domains 334 548 IPR036259 -
Csa05g02780 581 PANTHER MFS TRANSPORTER 9 564 - -
Csa05g02780 581 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 564 - -
Csa05g02780 581 SUPERFAMILY MFS general substrate transporter 24 545 IPR036259 -
Csa05g02780 581 CDD MFS_Mch1p_like 23 533 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01332 Csa-Chr1:8623617 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa02g01677 Csa-Chr2:16011104 Csa05g02780 Csa-Chr5:28460136 4.73E-56 dispersed
Csa02g01686 Csa-Chr2:16082223 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa03g03303 Csa-Chr3:30105502 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa04g02020 Csa-Chr4:20332608 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa05g02773 Csa-Chr5:28438039 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa05g02776 Csa-Chr5:28446206 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa05g02777 Csa-Chr5:28449849 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa05g02778 Csa-Chr5:28453067 Csa05g02780 Csa-Chr5:28460136 0 dispersed
Csa05g02780 Csa-Chr5:28460136 Csa06g02620 Csa-Chr6:23040506 0 dispersed
Csa05g02779 Csa-Chr5:28456728 Csa05g02780 Csa-Chr5:28460136 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02780 - - csv:101204293 1097.8