Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02787 ATGGGTCCGTCGGAGGAAGATATGGTGGTGAATCAACTGCCGGAGTCTGTGAGGGAGATTTCAGGACTTCCTGAGTGTAACGGTATCTGTAAGAAGATGTATGGGGACCTGATTCGAAGAGTCAAACTATTGAGCCCTCTGTTTGAAGAATTAAGAGATGGGGAAGAAGAAGTTGAGCTGGATGTTCTTAAGGGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCTATTGAGCTTCTTAAGTCGGTCAGCCAAGGTAGCAAGCTATTTCAGGCTTCGCAGTCGGAAAAGATTGGACTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTTGGGATCTCGGACGAGGTTCGAGAACAGACTGAACTTGTTCATGCGCAATTCAAACGAGCAAAAGAGCGAGTAAATTTAGCCGATACACAATTAGACAAGGATTTAGCTATATTACAAGAAGAAAAAGATCCTGACCCTGCAGTATTGAAGAGACTTTCTGAAAAGTTGCATCTTCGAACTATAAACGAGCTGAAGAAAGAGTCACTAGCGATCCACGAGTTGGTGATCTCGAGTGATGGAGACCCTGAGGATGTTTTTGGTAAAATGTCGTCCATTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCGGAAGTTGAAATTTCTCAAGACGAAAAAACTACAACCATTAAACACAGATCTCCAGTCATCCCCGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCAGTTATCGTTTCCACCGGGCAGACATATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAGACTTGTCCAAAATCTCAGCAAGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTGTGGTGCGAGAACAATGGTGTTGAACTGCCAAAGAAGCAAGGTAGCTGTAGAAACAAGAAAGCCGGAAACAATGTTTCAGACTGTGATCGGTCAGCCATCGATGCGTTACTAGTAAAATTGGTAAATGGATCGCCGGAACAAAAAAGATCAGCTGCAGGTGAACTCCGGTTACTAGCAAAGAGGAATTCAGATAACAGAATTTGTATTGCTGAGGCAGGAGCTATTCCGTTCCTTGTTGAACTATTATCGTCAAATGACACTAGGACCCAGGAGCATGCAGTTACAGCATTATTGAACCTTTCAATCAACGACGGTAACAAAAGAACCATTGTCGATTTACGAGCCATTCCCGCTGTCGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCGAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTGTCCGTAATTGACGAGAACAAGGTTGCAATTGGAGCAGCTGGGGCAATTCCTGCTCTTATTACTTTGCTTCGAGAAGGTACACCGAGAGGAAAGAAAGATGCTGCCACTGCTATTTTCAATCTATCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGAATTGTGAATCCACTTATGGGATTTCTAAAAGATGCTGGAGGTGGAATGGTGGATGAAGCTCTAGCCATTCTAGCAATTCTTGCAACTCACCATGAAGGGAAAACAGCAATAGGGGAAGCTGAGCCGATGGCGATTCTGTTGGAATTCATCAGAACAGGCTCTCCACGAAACCGGGAGAATGCTGCTGCAGTGCTGTGGTCGCTTTGTAGTACGGATTTCGAGCAGTTGAAGTTAGCTAGAGAACATGGAGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGCACAGAGAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTGTTTCAACGTTTTGATAAACCATCACCTAATCTATAA 1884 43.26 MGPSEEDMVVNQLPESVREISGLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEVELDVLKGLELLKIALDSAIELLKSVSQGSKLFQASQSEKIGLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVNLADTQLDKDLAILQEEKDPDPAVLKRLSEKLHLRTINELKKESLAIHELVISSDGDPEDVFGKMSSILKKLKDFVQSENPEVEISQDEKTTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALLHTALTPNYVLKSLIALWCENNGVELPKKQGSCRNKKAGNNVSDCDRSAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDGNKRTIVDLRAIPAVVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALITLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKTAIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTERAKRKAGSILELFQRFDKPSPNL* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28504015 28507169 - CsaV3_5G036060.1 Csa05g02787 531174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02787 627 Gene3D - 521 624 IPR011989 -
Csa05g02787 627 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 9 621 - -
Csa05g02787 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 319 IPR013083 -
Csa05g02787 627 CDD RING-Ubox_PUB 250 292 IPR045210 -
Csa05g02787 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 508 IPR000225 GO:0005515
Csa05g02787 627 SUPERFAMILY RING/U-box 244 321 - -
Csa05g02787 627 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Csa05g02787 627 Pfam Armadillo/beta-catenin-like repeat 414 453 IPR000225 GO:0005515
Csa05g02787 627 Pfam Armadillo/beta-catenin-like repeat 373 412 IPR000225 GO:0005515
Csa05g02787 627 Pfam Armadillo/beta-catenin-like repeat 456 494 IPR000225 GO:0005515
Csa05g02787 627 Pfam U-box domain 246 316 IPR003613 GO:0004842|GO:0016567
Csa05g02787 627 Gene3D - 324 418 IPR011989 -
Csa05g02787 627 PANTHER U BOX DOMAIN-CONTAINING 9 621 - -
Csa05g02787 627 Gene3D - 9 119 IPR036537 GO:0007166
Csa05g02787 627 SUPERFAMILY ARM repeat 340 617 IPR016024 -
Csa05g02787 627 Gene3D - 419 520 IPR011989 -
Csa05g02787 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 537 577 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 414 454 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 373 413 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 455 495 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 496 536 IPR000225 GO:0005515
Csa05g02787 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Csa05g02787 627 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02787 - - - csv:101221065 1165.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02707 Csa-Chr3:25874739 Csa05g02787 Csa-Chr5:28504015 1.77E-89 dispersed
Csa05g02038 Csa-Chr5:23691822 Csa05g02787 Csa-Chr5:28504015 5.63E-131 dispersed
Csa05g02787 Csa-Chr5:28504015 Csa06g01498 Csa-Chr6:12659968 0 dispersed
Csa05g02787 Csa-Chr5:28504015 Csa01g02400 Csa-Chr1:21307088 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g546 Blo04g00162 . . . . . . . . Cmo04g01454 Cma04g01383 Cma18g00906 Car04g01459 Car18g00828 . . Cpe09g00408 . . . . . . . Cla05g02163 Cam05g2319 Cec05g2340 Cco05g2381 Clacu05g2310 Cmu05g2175 Cre05g2297 Cone1ag1367 Cone5ag0357 . . . . Chy10g01301 Cme10g00093 . Blo04g00330 Bda14g00363 . . . . . . . . . . . . Cpe01g01250 . . . . . . . . . . . . . . . Lsi04g00088 Csa05g02787 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010303 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32