Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02787 ATGGGTCCGTCGGAGGAAGATATGGTGGTGAATCAACTGCCGGAGTCTGTGAGGGAGATTTCAGGACTTCCTGAGTGTAACGGTATCTGTAAGAAGATGTATGGGGACCTGATTCGAAGAGTCAAACTATTGAGCCCTCTGTTTGAAGAATTAAGAGATGGGGAAGAAGAAGTTGAGCTGGATGTTCTTAAGGGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCTATTGAGCTTCTTAAGTCGGTCAGCCAAGGTAGCAAGCTATTTCAGGCTTCGCAGTCGGAAAAGATTGGACTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTTGGGATCTCGGACGAGGTTCGAGAACAGACTGAACTTGTTCATGCGCAATTCAAACGAGCAAAAGAGCGAGTAAATTTAGCCGATACACAATTAGACAAGGATTTAGCTATATTACAAGAAGAAAAAGATCCTGACCCTGCAGTATTGAAGAGACTTTCTGAAAAGTTGCATCTTCGAACTATAAACGAGCTGAAGAAAGAGTCACTAGCGATCCACGAGTTGGTGATCTCGAGTGATGGAGACCCTGAGGATGTTTTTGGTAAAATGTCGTCCATTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCGGAAGTTGAAATTTCTCAAGACGAAAAAACTACAACCATTAAACACAGATCTCCAGTCATCCCCGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCAGTTATCGTTTCCACCGGGCAGACATATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAGACTTGTCCAAAATCTCAGCAAGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTGTGGTGCGAGAACAATGGTGTTGAACTGCCAAAGAAGCAAGGTAGCTGTAGAAACAAGAAAGCCGGAAACAATGTTTCAGACTGTGATCGGTCAGCCATCGATGCGTTACTAGTAAAATTGGTAAATGGATCGCCGGAACAAAAAAGATCAGCTGCAGGTGAACTCCGGTTACTAGCAAAGAGGAATTCAGATAACAGAATTTGTATTGCTGAGGCAGGAGCTATTCCGTTCCTTGTTGAACTATTATCGTCAAATGACACTAGGACCCAGGAGCATGCAGTTACAGCATTATTGAACCTTTCAATCAACGACGGTAACAAAAGAACCATTGTCGATTTACGAGCCATTCCCGCTGTCGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCGAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTGTCCGTAATTGACGAGAACAAGGTTGCAATTGGAGCAGCTGGGGCAATTCCTGCTCTTATTACTTTGCTTCGAGAAGGTACACCGAGAGGAAAGAAAGATGCTGCCACTGCTATTTTCAATCTATCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGAATTGTGAATCCACTTATGGGATTTCTAAAAGATGCTGGAGGTGGAATGGTGGATGAAGCTCTAGCCATTCTAGCAATTCTTGCAACTCACCATGAAGGGAAAACAGCAATAGGGGAAGCTGAGCCGATGGCGATTCTGTTGGAATTCATCAGAACAGGCTCTCCACGAAACCGGGAGAATGCTGCTGCAGTGCTGTGGTCGCTTTGTAGTACGGATTTCGAGCAGTTGAAGTTAGCTAGAGAACATGGAGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGCACAGAGAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTGTTTCAACGTTTTGATAAACCATCACCTAATCTATAA 1884 43.26 MGPSEEDMVVNQLPESVREISGLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEVELDVLKGLELLKIALDSAIELLKSVSQGSKLFQASQSEKIGLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVNLADTQLDKDLAILQEEKDPDPAVLKRLSEKLHLRTINELKKESLAIHELVISSDGDPEDVFGKMSSILKKLKDFVQSENPEVEISQDEKTTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALLHTALTPNYVLKSLIALWCENNGVELPKKQGSCRNKKAGNNVSDCDRSAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDGNKRTIVDLRAIPAVVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALITLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKTAIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTERAKRKAGSILELFQRFDKPSPNL* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28504015 28507169 - CsaV3_5G036060.1 Csa05g02787 531174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02787 627 Gene3D - 521 624 IPR011989 -
Csa05g02787 627 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 9 621 - -
Csa05g02787 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 319 IPR013083 -
Csa05g02787 627 CDD RING-Ubox_PUB 250 292 IPR045210 -
Csa05g02787 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 508 IPR000225 GO:0005515
Csa05g02787 627 SUPERFAMILY RING/U-box 244 321 - -
Csa05g02787 627 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Csa05g02787 627 Pfam Armadillo/beta-catenin-like repeat 414 453 IPR000225 GO:0005515
Csa05g02787 627 Pfam Armadillo/beta-catenin-like repeat 373 412 IPR000225 GO:0005515
Csa05g02787 627 Pfam Armadillo/beta-catenin-like repeat 456 494 IPR000225 GO:0005515
Csa05g02787 627 Pfam U-box domain 246 316 IPR003613 GO:0004842|GO:0016567
Csa05g02787 627 Gene3D - 324 418 IPR011989 -
Csa05g02787 627 PANTHER U BOX DOMAIN-CONTAINING 9 621 - -
Csa05g02787 627 Gene3D - 9 119 IPR036537 GO:0007166
Csa05g02787 627 SUPERFAMILY ARM repeat 340 617 IPR016024 -
Csa05g02787 627 Gene3D - 419 520 IPR011989 -
Csa05g02787 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 537 577 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 414 454 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 373 413 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 455 495 IPR000225 GO:0005515
Csa05g02787 627 SMART arm_5 496 536 IPR000225 GO:0005515
Csa05g02787 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Csa05g02787 627 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02707 Csa-Chr3:25874739 Csa05g02787 Csa-Chr5:28504015 1.77E-89 dispersed
Csa05g02038 Csa-Chr5:23691822 Csa05g02787 Csa-Chr5:28504015 5.63E-131 dispersed
Csa05g02787 Csa-Chr5:28504015 Csa06g01498 Csa-Chr6:12659968 0 dispersed
Csa05g02787 Csa-Chr5:28504015 Csa01g02400 Csa-Chr1:21307088 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02787 - - csv:101221065 1165.6