Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02810 ATGGCCAAAGACGACGTCACGACGGCAAGAGGGTTCTCCGGCAAGGACTACCACGACCCTCCTCCAGCCCCGCTCTTCGACGCGGCGGAGCTAGGCAAGTGGTCCTTTTACAGAGCCATCATTGCTGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACTATCTTGACTATTATCGGCTACAACAGCCAGACCGATACCGACAAGCCCGGCGCCAACGCTTGCGATGGCGTTGGCATTCTCGGCATCGCTTGGTCCTTTGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCTGGCATTTCAGGAGGGCACATAAACCCGGCGGTGACGTTCGGGCTGTTCTTGGCTCGTAAAGTGTCGTTGGTGCGAGCAGTAGCGTACATGGTGGCTCAGTGTTTGGGGGCCGTTTGCGGTGCGGGGCTAGTAAAAGCCTTCCAAAAGGGTTACTACAACAAGTACGGTGGCGGTGCGAACCAACTCGCCCATGGCTACTCCAAAGGCACCGGTTTAGGAGCTGAAATCGTTGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACCGATTCCAAGAGAAATGCCAGAGACTCCCATGTTCCTGTATTGGCTCCACTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATCACCGGCACAAGCATCAACCCTGCAAGAAGCTTCGGCCCTGCTGTTATCTTGAATAGGGAAAAACCTTGGGATGACCATTGGATATTCTGGGTTGGGCCATTTGTGGGAGCGGCCATCGCAGCGTTCTACCACCAGTTCATCTTGAGGGCGGGCGCGGCCAAAGCTCTGGGCTCTTTCAGGAGCAACCCCTCCGTCTGA 864 54.86 MAKDDVTTARGFSGKDYHDPPPAPLFDAAELGKWSFYRAIIAEFIATLLFLYVTILTIIGYNSQTDTDKPGANACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAVCGAGLVKAFQKGYYNKYGGGANQLAHGYSKGTGLGAEIVGTFILVYTVFSATDSKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNREKPWDDHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSNPSV* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28635798 28639900 + CsaV3_5G036290.1 Csa05g02810 531197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02810 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 284 IPR034294 -
Csa05g02810 287 TIGRFAM MIP: MIP family channel proteins 42 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g02810 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Csa05g02810 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g02810 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Csa05g02810 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g02810 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g02810 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g02810 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g02810 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g02810 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g02810 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Csa05g02810 287 PANTHER AQUAPORIN PIP2-4-RELATED 9 284 - -
Csa05g02810 287 CDD MIP 38 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01138 Csa-Chr4:9698165 Csa05g02810 Csa-Chr5:28635798 3.55E-13 dispersed
Csa05g02810 Csa-Chr5:28635798 Csa06g02568 Csa-Chr6:22701550 4.49E-170 dispersed
Csa07g00108 Csa-Chr7:967881 Csa05g02810 Csa-Chr5:28635798 6.06E-159 transposed
Csa03g03271 Csa-Chr3:29893968 Csa05g02810 Csa-Chr5:28635798 6.46E-154 wgd
Csa05g02810 Csa-Chr5:28635798 Csa06g02254 Csa-Chr6:20243217 4.86E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02810 K09872 - csv:101204956 576.63