Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02830 ATGTTAGGGCATGTTTGGCTTGAAGGTACTTCAATGGCAGGAATGTTTAATGGGGAGGGTTCATCGTCGGTAACTTCGTCGCCTTTGCAGTTTTTTCCGTGGTCGTTATCACCCGGTATAGGATCGCCATACCCTTTTCTAAGAGAACTCAAATCTGAAGAGAGGGGCTTGTGTTTGATTCACCTACTTCTTGGCTGTGCTAACCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTCGAGCAAATTTCCCACCTTGCTTCGCCAGACGGGGACACAATGCAGCGGATTGCTGCTTACTTCACCGAGGCACTCGCGGATCGAATACTTAAATCCTGGCCTGGCTTACACAGAGCCTTGAACTCTACCAAAATTTTGTCAGTCCCTGAAGAGATTCTTGCCCAGAGACTGTTCTTTGAATTATGTCCTTTCTTGAAGCTTGCATATGTGATGACTAACCAGGCTATTATAGAAGCCATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAGTGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCACCTGAGAATAACTGGAATTCATGAACAAAAGGAAGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTCAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAGGGTTAAGACAGGTGAAGCACTTGCAGTTAGCTCTGTTCTTGAACTTCATTCGGTTTTGGCTACAGATGACGATAAGAAAACGTCTCCACCTGCATCAAAAAATTTGCAAAAGCTCCTACGTATGAAGCAGCGAACATTAGGAGAATGGCTCGAGACAGATTCGTTGCAAGTTTTTAGCAGCCCGGATTCAGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAACAGTTTTTTGACTGCATTATGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAGCAAGAATCAAACCTGAATGGATCTGCTTTCATGGAAAGAGTACTAGAAGCATTGAACTTCTATGCTGCATTGTTTGATTGCTTAGAGTCAACCGTGTCACGATCATCGATCGAACGACAAAGGGTCGAGAAAATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGAGCAGAGAGGACGGAGAGGCATGAAAAGCTAGAGAAATGGATGCTGAGGCTTGAATCTGTGGGGTTCGGAAAGGTTCCATTGAGTTACCATAGTATGTTATTGGGAAGTAGATTGTTGCAGAGCTATGGATATGATGGGTATAAAATCAAAGAAGAGAATGGATTTTTGTTTATCTGCTGGCAAGATAGGCCTCTTTTCTCAGTTTCAGCTTGGGGGTTTCAAAGGCAAAGCTCATGA 1443 42.97 MLGHVWLEGTSMAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLGCANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHRALNSTKILSVPEEILAQRLFFELCPFLKLAYVMTNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLRVKTGEALAVSSVLELHSVLATDDDKKTSPPASKNLQKLLRMKQRTLGEWLETDSLQVFSSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERTERHEKLEKWMLRLESVGFGKVPLSYHSMLLGSRLLQSYGYDGYKIKEENGFLFICWQDRPLFSVSAWGFQRQSS* 481
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 28763181 28766167 + CsaV3_5G036490.1 Csa05g02830 531217
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02830 480 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 15 475 - -
Csa05g02830 480 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 475 IPR005202 -
Csa05g02830 480 Pfam GRAS domain family 59 473 IPR005202 -
Csa05g02830 480 ProSiteProfiles GRAS family profile. 50 474 IPR005202 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03195 Csa-Chr1:28029961 Csa05g02830 Csa-Chr5:28763181 0 dispersed
Csa05g02016 Csa-Chr5:23548902 Csa05g02830 Csa-Chr5:28763181 2.03E-70 dispersed
Csa05g02830 Csa-Chr5:28763181 Csa02g02578 Csa-Chr2:22508174 1.11E-76 dispersed
Csa05g02830 Csa-Chr5:28763181 Csa06g00941 Csa-Chr6:7561913 7.17E-67 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31858 PF03514 GRAS 2.40E-135 CL0063 Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02830 - - csv:101203396 929.858