Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02847 ATGACATCTGCAAATCCTTATTTTGATGACATCCGGAACAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGATCTGGAGGAAAACCTAACGTAGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACATTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATACCAAACTTTTGGATGTGTGGGCATATATCCATACTATAGCAAGCTGAAACATGAATCTCAGTGTATATATCGACCCTATAACTGTCCGTATGCGGGTTCGGAATGCTCAGTTATTGGCGACATTCCATTTTTGGTATCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGATATGTCAAGTCAAACCCACAAGAGGTCGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCCGTCTACATAGCTTTCTTGCGGTTTATGGGCGACGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTCATTATCCAACGTAATATGGCACTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 915 45.03 MTSANPYFDDIRNKPEVIDPPQDDDMMDVSESVSDPARSGGKPNVVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCIYRPYNCPYAGSECSVIGDIPFLVSHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28844932 28850543 + CsaV3_5G036660.1 Csa05g02847 531234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02847 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Csa05g02847 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Csa05g02847 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Csa05g02847 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 108 IPR013083 -
Csa05g02847 304 SUPERFAMILY TRAF domain-like 109 301 - -
Csa05g02847 304 MobiDBLite consensus disorder prediction 1 45 - -
Csa05g02847 304 CDD RING-HC_SIAHs 54 92 - -
Csa05g02847 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Csa05g02847 304 SUPERFAMILY RING/U-box 48 96 - -
Csa05g02847 304 CDD Sina 170 298 - -
Csa05g02847 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Csa05g02847 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 304 - -
Csa05g02847 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01349 Csa-Chr4:13721917 Csa05g02847 Csa-Chr5:28844932 3.05E-155 dispersed
Csa05g01662 Csa-Chr5:19753772 Csa05g02847 Csa-Chr5:28844932 0 dispersed
Csa05g02847 Csa-Chr5:28844932 Csa06g00720 Csa-Chr6:5872376 5.63E-166 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02847 K04506 - csv:101205198 640.573