Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02849 | ATGAGTTTCGATTCATTTTTTCCAGAAATGTCACTCAAGTTACACCATATTGATCTAAAGGGTTATTCAGGTGCCCAGAAAAGGCTGAAGGATCTAACGGCTCATTCTGGCAATAAATACTGTGCAGATTGCGGATCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGAGCATTTATTTGCATCAAGTGCTCTGGAGTACACAGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAAGAAGTTGATGCTTTGATGAGCGTTGGCGGAAATACAGCTGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAACAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTCACAAATCTAGACGATCAATTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATTACTCTCACACAGCACTTCCAGTACTGATGCCAACCAAGAAAGGAGAAATTATGAAAAAGTTCCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAAAAACTGCAAGAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTCGGTTTAATTAAGGTCAATGTGGTTAGAGGAACAAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCTTATGTAATTCTCTCATTGGGCCACCAATCTGTGAAAACACGAGTTATAAAGAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACTGCGGCCCGAGCCTGTGAGAGGTCCACAATCTGTGAGCCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTTGATGGGAAGATTCGACAAGACATATCTTTGAAGCTGCAGAATGTGGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG | 1143 | 41.82 | MSFDSFFPEMSLKLHHIDLKGYSGAQKRLKDLTAHSGNKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEEVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRKKYELLQFTNLDDQFFCPFPPPQKRNSLLSHSTSSTDANQERRNYEKVPTKTRIGSAFRNSWGRKDSEHKNCKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTICEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ* | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28851628 | 28857348 | + | CsaV3_5G036680.1 | Csa05g02849 | 531236 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02849 | 380 | MobiDBLite | consensus disorder prediction | 158 | 180 | - | - | |
Csa05g02849 | 380 | ProSiteProfiles | C2 domain profile. | 206 | 322 | IPR000008 | - | |
Csa05g02849 | 380 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED | 15 | 380 | - | - | |
Csa05g02849 | 380 | Pfam | Putative GTPase activating protein for Arf | 27 | 141 | IPR001164 | GO:0005096 | |
Csa05g02849 | 380 | SMART | C2_3c | 225 | 320 | IPR000008 | - | |
Csa05g02849 | 380 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 15 | 380 | IPR044518 | GO:0005096|GO:0005543 | |
Csa05g02849 | 380 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 26 | 141 | IPR037278 | - | |
Csa05g02849 | 380 | CDD | ArfGap | 29 | 135 | - | - | |
Csa05g02849 | 380 | Pfam | C2 domain | 225 | 315 | IPR000008 | - | |
Csa05g02849 | 380 | PRINTS | HIV Rev interacting protein signature | 38 | 57 | IPR001164 | GO:0005096 | |
Csa05g02849 | 380 | PRINTS | HIV Rev interacting protein signature | 57 | 74 | IPR001164 | GO:0005096 | |
Csa05g02849 | 380 | PRINTS | HIV Rev interacting protein signature | 78 | 99 | IPR001164 | GO:0005096 | |
Csa05g02849 | 380 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 26 | 141 | IPR001164 | GO:0005096 | |
Csa05g02849 | 380 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 223 | 317 | IPR035892 | - | |
Csa05g02849 | 380 | Gene3D | Arf GTPase activating protein | 15 | 147 | IPR038508 | - | |
Csa05g02849 | 380 | Gene3D | C2 domain | 223 | 377 | IPR035892 | - | |
Csa05g02849 | 380 | SMART | arf_gap_3 | 26 | 148 | IPR001164 | GO:0005096 | |
Csa05g02849 | 380 | CDD | C2_ArfGAP | 223 | 367 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04608 | Csa-Chr3:40054881 | Csa05g02849 | Csa-Chr5:28851628 | 5.85E-20 | dispersed | |
Csa05g01664 | Csa-Chr5:19769497 | Csa05g02849 | Csa-Chr5:28851628 | 7.04E-180 | dispersed | |
Csa05g02849 | Csa-Chr5:28851628 | Csa06g03849 | Csa-Chr6:30542624 | 5.50E-109 | dispersed | |
Csa05g02849 | Csa-Chr5:28851628 | Csa01g02626 | Csa-Chr1:23243264 | 1.21E-112 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02849 | K12486 | - | csv:101221541 | 764.992 |