Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02849 ATGAGTTTCGATTCATTTTTTCCAGAAATGTCACTCAAGTTACACCATATTGATCTAAAGGGTTATTCAGGTGCCCAGAAAAGGCTGAAGGATCTAACGGCTCATTCTGGCAATAAATACTGTGCAGATTGCGGATCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGAGCATTTATTTGCATCAAGTGCTCTGGAGTACACAGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAAGAAGTTGATGCTTTGATGAGCGTTGGCGGAAATACAGCTGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAACAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTCACAAATCTAGACGATCAATTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATTACTCTCACACAGCACTTCCAGTACTGATGCCAACCAAGAAAGGAGAAATTATGAAAAAGTTCCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAAAAACTGCAAGAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTCGGTTTAATTAAGGTCAATGTGGTTAGAGGAACAAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCTTATGTAATTCTCTCATTGGGCCACCAATCTGTGAAAACACGAGTTATAAAGAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACTGCGGCCCGAGCCTGTGAGAGGTCCACAATCTGTGAGCCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTTGATGGGAAGATTCGACAAGACATATCTTTGAAGCTGCAGAATGTGGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 1143 41.82 MSFDSFFPEMSLKLHHIDLKGYSGAQKRLKDLTAHSGNKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEEVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERFDFIRKKYELLQFTNLDDQFFCPFPPPQKRNSLLSHSTSSTDANQERRNYEKVPTKTRIGSAFRNSWGRKDSEHKNCKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTICEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28851628 28857348 + CsaV3_5G036680.1 Csa05g02849 531236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02849 380 MobiDBLite consensus disorder prediction 158 180 - -
Csa05g02849 380 ProSiteProfiles C2 domain profile. 206 322 IPR000008 -
Csa05g02849 380 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 15 380 - -
Csa05g02849 380 Pfam Putative GTPase activating protein for Arf 27 141 IPR001164 GO:0005096
Csa05g02849 380 SMART C2_3c 225 320 IPR000008 -
Csa05g02849 380 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 15 380 IPR044518 GO:0005096|GO:0005543
Csa05g02849 380 SUPERFAMILY ArfGap/RecO-like zinc finger 26 141 IPR037278 -
Csa05g02849 380 CDD ArfGap 29 135 - -
Csa05g02849 380 Pfam C2 domain 225 315 IPR000008 -
Csa05g02849 380 PRINTS HIV Rev interacting protein signature 38 57 IPR001164 GO:0005096
Csa05g02849 380 PRINTS HIV Rev interacting protein signature 57 74 IPR001164 GO:0005096
Csa05g02849 380 PRINTS HIV Rev interacting protein signature 78 99 IPR001164 GO:0005096
Csa05g02849 380 ProSiteProfiles ARF GTPase-activating proteins domain profile. 26 141 IPR001164 GO:0005096
Csa05g02849 380 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 223 317 IPR035892 -
Csa05g02849 380 Gene3D Arf GTPase activating protein 15 147 IPR038508 -
Csa05g02849 380 Gene3D C2 domain 223 377 IPR035892 -
Csa05g02849 380 SMART arf_gap_3 26 148 IPR001164 GO:0005096
Csa05g02849 380 CDD C2_ArfGAP 223 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04608 Csa-Chr3:40054881 Csa05g02849 Csa-Chr5:28851628 5.85E-20 dispersed
Csa05g01664 Csa-Chr5:19769497 Csa05g02849 Csa-Chr5:28851628 7.04E-180 dispersed
Csa05g02849 Csa-Chr5:28851628 Csa06g03849 Csa-Chr6:30542624 5.50E-109 dispersed
Csa05g02849 Csa-Chr5:28851628 Csa01g02626 Csa-Chr1:23243264 1.21E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02849 K12486 - csv:101221541 764.992