Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02855 ATGGGTTGGATTGAGTTGGGGGGGGAGAGAAAGAGAGATTATGTAACAAAATCTGTGGGATCTTCCTTTCCAAACTGTCAAAATTTTGTAAGGATTTCTCCATATCTCAAATTCCTCATTCTAATAATAATATCTTCTTCTCACGCAATCTCTTCTTCTTTCTTCCCCATTTCATTTATAAATCCTCTCTCCTTCTTCTCCTTCCCACCAAATTTCCCTTTCCTCTTCTTCTTCTTCTTCCTTCCTCTTCTTTCTTTGATATATATTAATATAATGTCCCTTCTCTCTTCTGATCAGCCTCGCTTTCATGTTTTGGCTGTTGATGACAGCCTTGTTGACAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGTTGTGGATTCTGGAAGCAAAGCTTTAGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAACCAACCACAGTTCTCCTATTTCCCCTGAAGATCATCGTCAACATCATCAAGAGATTGAAGTTAATCTCATCATTACAGATTATTGTATGCCAGAGATGACAGGCTTTGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTTAAACCAGTGAAATTATCTGATGTGAACAAGCTTAAGCCTTTTATATGTAGAGGAATAAAAGCCAAAGAAATGGATTTCAACCATCTCAAGAGAAAGGAAATGGAAATCATATGA 795 37.86 MGWIELGGERKRDYVTKSVGSSFPNCQNFVRISPYLKFLILIIISSSHAISSSFFPISFINPLSFFSFPPNFPFLFFFFFLPLLSLIYINIMSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTVVDSGSKALELLGLVRERNGTNHSSPISPEDHRQHHQEIEVNLIITDYCMPEMTGFDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGIKAKEMDFNHLKRKEMEII* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28884165 28886179 - CsaV3_5G036740.1 Csa05g02855 531242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02855 264 SUPERFAMILY CheY-like 101 235 IPR011006 -
Csa05g02855 264 Pfam Response regulator receiver domain 104 235 IPR001789 GO:0000160
Csa05g02855 264 SMART REC_2 102 239 IPR001789 GO:0000160
Csa05g02855 264 Gene3D - 103 258 - -
Csa05g02855 264 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 77 264 - -
Csa05g02855 264 CDD REC_typeA_ARR 104 238 - -
Csa05g02855 264 ProSiteProfiles Response regulatory domain profile. 103 243 IPR001789 GO:0000160
Csa05g02855 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 77 264 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01629 Csa-Chr5:19338596 Csa05g02855 Csa-Chr5:28884165 1.74E-69 dispersed
Csa05g02375 Csa-Chr5:25975705 Csa05g02855 Csa-Chr5:28884165 1.48E-48 dispersed
Csa05g02855 Csa-Chr5:28884165 Csa06g02147 Csa-Chr6:19229914 5.63E-47 dispersed
Csa05g02855 Csa-Chr5:28884165 Csa01g00186 Csa-Chr1:1207077 3.94E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31860 PF00072 Response_reg 1.50E-19 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02855 K14492 - csv:101207245 328.561