Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02868 ATGACCGATGTCAGTCCAAGGACTGATATCTCTACTGATGTCGACACTGATGACAAACACCAGAGGCTCGATATGCTTCAACGGAATGCTGTGGCTTCTGATTCCAGTGATCGAACGAAAGATAAGTCTGATCAGAAGACTCTACGCAGGCTTGCACAGAATCGTGAAGCTGCCAGGAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAACTAGAGCAGGAGCTTCAGCGGGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGGCCCATTCAATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAAATCAATGAACTGAGAGCAGCTGTTAATTCTCATGCCAGTGATACTGAACTTCGAATGATTGTGGATGGCATCTTGGCTCATTATGATGAAGTTTTTCGGCTAAAGGGTGTCGCTGCAAAGGCTGATGTTTTTCATTTACTGTCTGGCATGTGGAAAACTCCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCGTCAGAGCTTCTAAAGCTTCTTGTCAATCAATTGGAGCCCCTCACAGAACAGCAGTTGATGGGCATATCCAACTTGCAGCAGTCCTCACAACAGACCGAAGATGCATTGTCACAAGGCATGGAAGCATTGCAACAATCGTTGGCTGAGACGTTATCCAGTGGATCTCTTGGCTCCTCGAATACATCTGGCAATGTGGCAAACTATATGGGTCAAATGGCCACGGCCATGGGTAAACTTGGGACCCTTGAGGGTTTTATTCGCCAGGCTGACAATCTACGACAACAAACACTACAACAAATGCATCGGATTTTGACAATTCGTCAGTCGGCTCGTGCACTTCTTGCAATTCATGATTACTTCTCCAGACTGCGAGCCCTTAGCTCCCTCTGGCTTGCTCGCCCAAAAGAGTGA 996 47.09 MTDVSPRTDISTDVDTDDKHQRLDMLQRNAVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGILAHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMHRILTIRQSARALLAIHDYFSRLRALSSLWLARPKE* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29012510 29021451 + CsaV3_5G036870.1 Csa05g02868 531255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02868 331 MobiDBLite consensus disorder prediction 10 25 - -
Csa05g02868 331 Pfam Seed dormancy control 128 203 IPR025422 GO:0006351|GO:0043565
Csa05g02868 331 ProSiteProfiles DOG1 domain profile. 111 328 IPR025422 GO:0006351|GO:0043565
Csa05g02868 331 Coils Coil 122 142 - -
Csa05g02868 331 Gene3D - 45 97 - -
Csa05g02868 331 MobiDBLite consensus disorder prediction 1 48 - -
Csa05g02868 331 PANTHER TRANSCRIPTION FACTOR TGA9 1 331 - -
Csa05g02868 331 SMART brlzneu 42 105 IPR004827 GO:0003700|GO:0006355
Csa05g02868 331 SUPERFAMILY Leucine zipper domain 46 89 IPR046347 GO:0003700|GO:0006355
Csa05g02868 331 Pfam Basic region leucine zipper 42 88 IPR004827 GO:0003700|GO:0006355
Csa05g02868 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 44 88 IPR004827 GO:0003700|GO:0006355
Csa05g02868 331 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 331 - -
Csa05g02868 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 49 64 IPR004827 GO:0003700|GO:0006355
Csa05g02868 331 MobiDBLite consensus disorder prediction 34 48 - -
Csa05g02868 331 Coils Coil 65 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03707 Csa-Chr3:32935303 Csa05g02868 Csa-Chr5:29012510 0 dispersed
Csa05g02868 Csa-Chr5:29012510 Csa06g02195 Csa-Chr6:19810153 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31864 PF14144 DOG1 5.00E-33 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02868 K14431 - csv:101216885 601.668