Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02873 ATGGATCAACTTACCAAATACCTCGACAAGGAAATACCCAACGTGGAGAATTTTGAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGACGCCGACGAGGATCAAGAAGATGGACAAGACGACTGGGACGATTGGAATGCAGACGAAGAAGAAGGCGAAGAAGCATTTGATTCGAATTTTCTGTGTCTGTTCTGCAACTCAAAGTACAACGACTGCAACGTGTTGTTCAACCATTGCAACTCAGTTCACTATTTCGATTTCCACAGCATCAGAAAGGATCTGGGTTTAGATTTTTATGGTTCTTTCAAAATTATCAACTACGTACGCTCTCAGGTTGCAGAAAATAGGTGCTGGAGCTGTGGTCTCTCGTGTCAATCAAACCTGGATTTACAGCACCATTTACACAAAATTTTAAATCTCAATGACATAAAGGCTCTTTGGGACGATGATAAATATCTAAAACCCTTCAAGCAAAATGATCCCCTTCTGTACAGTTTTGCAGAAGATGAAGAGGATGATGATGAAACAACTAGAGAAAATCTTCCATTTCATGCAAACCAAAACCAAAAAAATGGAATGGAAGATTGTACTTCTGCTTCACATGGTTATTTGAATGCTGCAAGCAGCTTAGAGGCCAAGATTGAGAATACTGTGGAAACCACGAAAACATTGGAGTTGAAATATGACGTGCAGGAAGACAATCAATTAAAAATAGCCAGACAAATCTTTGATAGAAATGACATAAAAAATGCAAATGAAAATTACTTCGGTTCGTATGGCTCTTTTGGCATACACAGAGAGATGTTAAGCGACAAGGTTAGAATGGAAGCTTATATGAAGGCTATTTTGGAAAATCCATCTCTCTTCCAGAATGCAGCTGTGATGGATGTAGGCTGTGGAACGGGCATACTTAGTCTCTTTGCTGCAAAAGCAGGTGCATCAAGAGTTATTGCAGTTGAAGCGAGTGAAAAGATGGCTGCAGTGGCCACTCAAATTGTAGAAGACAATGGCCTCTGGCGGAACAGGAAACAAACTAGAGAATGTGGCGTGTCAAGTGGGATTATAGAAGTGGTTCATGGTATGGTAGAAGAACTCGACAAGAGCATAGAGATTCAGCCTCATAGTGTTGACGTATTATTGAGTGAATGGATGGGCTATTGCTTGTTGTATGAGACAATGCTCAGCTCAGTTCTCTTTGCAAGGGATCGTTGGTTGAAACCTGGAGGTGCAATCTTACCAGATACTGCCACAATTCTTGTTGCAGGATTTGGAGTTGGTGGAACCAGTCTTCCATTTTGGGAAAATGTGTACGGTTTCAGAATGTCTTGTGTTGGGAAGGAACTTGTAAAGGATGCTGCCAAAGCTCCCATCGTGGACATTGTGGATGCTAATGATTTAGTAACTAGTCCTGCAATTCTTCATACTTTCGATCTAGCAACTATGCGTCTTGATGAAGTAGACTTCACAGCGAGGACCGAGTTGGAACCAAATTTACATAATCCTTCAAACAACTCAAATAGTGTTGAAGTTGAAGCATCTTGGTGTCACGGAGTTGTCCTATGGTTTGAAACTGGTTTCACAAGCAGATTTTGCAAGGAATCACCGGCTGTTCTGTCTACATCTCCATACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCGGAGAACCAATTGCTGTAGCATCTAGAAAGTCGGTAACCAATATATCAGCACCAGTAGGCAGCCATGCCTGCCCTGCTATCAAACTTCACTTGCGACTTAGCATTGCCCGTGCGCCTGAACATCGAAGCATAGACATTTCACTAGAGACTACTGGGATTGCTGGTGATGGTAGGAAGCGCCACTGGCCGGTACAACTGTTCACACTAAGATAG 1884 42.04 MDQLTKYLDKEIPNVENFEREEEEEEEEEDDADEDQEDGQDDWDDWNADEEEGEEAFDSNFLCLFCNSKYNDCNVLFNHCNSVHYFDFHSIRKDLGLDFYGSFKIINYVRSQVAENRCWSCGLSCQSNLDLQHHLHKILNLNDIKALWDDDKYLKPFKQNDPLLYSFAEDEEDDDETTRENLPFHANQNQKNGMEDCTSASHGYLNAASSLEAKIENTVETTKTLELKYDVQEDNQLKIARQIFDRNDIKNANENYFGSYGSFGIHREMLSDKVRMEAYMKAILENPSLFQNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIVEDNGLWRNRKQTRECGVSSGIIEVVHGMVEELDKSIEIQPHSVDVLLSEWMGYCLLYETMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFRMSCVGKELVKDAAKAPIVDIVDANDLVTSPAILHTFDLATMRLDEVDFTARTELEPNLHNPSNNSNSVEVEASWCHGVVLWFETGFTSRFCKESPAVLSTSPYTPKTHWSQTILTFGEPIAVASRKSVTNISAPVGSHACPAIKLHLRLSIARAPEHRSIDISLETTGIAGDGRKRHWPVQLFTLR* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29079568 29087660 + CsaV3_5G036920.1 Csa05g02873 531260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02873 627 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 31 625 IPR025799 GO:0016274|GO:0018216
Csa05g02873 627 ProSitePatterns Zinc finger C2H2 type domain signature. 63 84 IPR013087 -
Csa05g02873 627 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 31 625 - -
Csa05g02873 627 MobiDBLite consensus disorder prediction 1 46 - -
Csa05g02873 627 Gene3D - 417 618 - -
Csa05g02873 627 Pfam Methyltransferase domain 295 410 IPR041698 -
Csa05g02873 627 MobiDBLite consensus disorder prediction 18 46 - -
Csa05g02873 627 CDD AdoMet_MTases 295 413 - -
Csa05g02873 627 Coils Coil 15 38 - -
Csa05g02873 627 MobiDBLite consensus disorder prediction 1 17 - -
Csa05g02873 627 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 253 585 IPR025799 GO:0016274|GO:0018216
Csa05g02873 627 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 259 570 IPR029063 -
Csa05g02873 627 Gene3D Vaccinia Virus protein VP39 243 414 IPR029063 -
Csa05g02873 627 SUPERFAMILY beta-beta-alpha zinc fingers 38 178 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02904 Csa-Chr1:25490485 Csa05g02873 Csa-Chr5:29079568 7.08E-70 dispersed
Csa05g00421 Csa-Chr5:2787330 Csa05g02873 Csa-Chr5:29079568 4.08E-08 dispersed
Csa05g01464 Csa-Chr5:16496650 Csa05g02873 Csa-Chr5:29079568 1.64E-46 dispersed
Csa05g02873 Csa-Chr5:29079568 Csa06g01519 Csa-Chr6:12751769 2.16E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02873 K11436 - csv:101215999 1164.83