Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02874 ATGGAAAACGTGGGCGAAACAAAGCCATTAGCTACAAATAGTTGCCATACTGATGGTGGAACAGACACTGCTGCCGACCTTCAATTTTCAGTACTATGTCAGCATGGACTACATCTGGACGAGAATTGTTGTAATCAAGCATTCAAGTTATTTAGAGAGACGAAACATCTTTTGGGGGCAAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCTTTTGTTTTATATTCAGTGAAGAGGCTGAGAGATAAGAATTCAGAGACTTCACATCAGGGATCTGAGAATAACAGCTTCACTTTATGCCACATATTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGCTGCCTCAATTTGTTGTTAAAGCTGGTCCAGTATTAAGTAATCTCTATGGTGCAGACTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTCGTGCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAGTTCTTCTCCACCAATGATGCTAATGTTGAAAAGCAGTCAGCTATATCCTGCCCTACCGGTTACTTATCTGATTATCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATGTTCCGGTTCATTTCAGAAACTTCAACATTCTTGACTCTGAACGCCTTGTTAAGAAAGGAGGAAAAGGAGTGGATCTGCTTGGATCACTTTGTGATGTCTATGACACCTCAGAGGAAGAACTGAGGGAAGTTATGGAAAAGGCTAATGGCTTGATAGAAGATATTTTGAAGAAGAAGCCTCGTTTGGCTTCTGAGTGTAACAGTAAAAGCTTGGAAAATATTGACACTGAGGGTTTGATATACTTTGAAGGCTTAATGGAGGAGCCATCTCTTTCAGCCAGTTTGGAAATTCTTGAAAAGGACTATGAAGATGCAATTCATAATAAAGGTGAGCAGCTTGATGAGCGGGTATTTGTTAACGACGAGGACAGTTTACTTGGGTCAGGTAGCTTGTCAGCAGGTGCTGTTACAATGGGTGGAATCAAGAGGAAGCTTGACTCAATGTGCTCTCCTGCAAGGACAATAACCAGTCCAATGTCTCCACTTCGCTCTCCTGCTTCACATGCCAATGGCACTCTTAACAGTGGCAACACAAAAATTGCAGCCACACCAGTTAGCACAGCCATGACAACGGCAAAGTGGCTCAGAACTGTTATTTCCCCCCTTCCAGCAAAACCTTCAGTGGAGATGGAGCGCTTTTTGGCTTCATGTGATAGGGATGTAACTAATGATGTAGTCCGCAGGGCACACATTATACTAGAGGCTATATTTCCAAATACCGCTCTAGGTGAGCGCTGTATAGCTGGAAGTTTACAAAGTGCAAGCCTCATGGATAACATCTGGGCAGAACAGCGGCGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCACAGATGCTGCATGTGACTAATTTGACCTCATTGCTGACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCAACGCATAAAACTGTTACGATGTTGTTTCCTGCAGTATTGGAGAGAACCGGCATCACAGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTCATTCGACACGAAGAATCGCTTCCTAGAGAATTAAGGCGACATCTCAATTCTTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCATCAATATATAACTCCCTGATTGTTGCTAAACCTGGCCTTGGTGCAGAAATTAATCGTCTGGGTTTATTAGCTGAACCCATGCCGTCTTTGGATGCAATTGCTGTTCAAATTAACTTCTCTGGTATCGGGGTATCAGCCACACCTAATTTGCAAAGGCATGAGAGTTTGCCAGGTCAGAATGGGGATATCAGGTCACCCAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGACTCATGGCTTTCAGTAGTATTAAATCTAAGCTTCTGCCACCTCCCTTACAGTCGGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGTGGTGGAGAAACGTGTGCTGAAACTGGAATTAACATTTTCTTTAGCAAGATCACAAAATTGGCTGCTGTAAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTGTCTCATCAGATTAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGACGTCAATATTGTTTAATCGTCACATCGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATATACAACTACAGGAAGCAACCACAATGTAAACCACAAGTCTTCCGCAATGTGTTTGTTGATTGGTCTTCAGCACGCCGTAATGGGAGATCAGGACAGGATCATGTGGATATAATTACCTTCTACAATGAAATATTTATCCCTTCTGTAAAACCTTTGCTCGTTGAGATTGGCCCAGCTGGATCAACCATGAAAACTGACAGGGTTCCTCAAGTCAACAACGACAGTGATGCACCGTGTCCTGGATCACCTAAGTTATCTCCTTTTCCAAGCCTTCCCGATATGTCACCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCGCCATTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCAAAAAGCTACTACGCTTGCGTTGGAGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATCAACAACCGTTTGAACGGTACACGAAAACTCCGAGGCACGTTAAATTTTGACGATGCGGACGTTGGTTTGGTTAGTGATTCCCTGGTGGCTAACAGCCTTTACCTACAAAATGGAAGTTGTGGATCATCTTCAGGTGCACCTATTAAATCTGAACAACCTGAGTCTTAA 3075 42.6 MENVGETKPLATNSCHTDGGTDTAADLQFSVLCQHGLHLDENCCNQAFKLFRETKHLLGANISAIGSGIPEEAERFWSAFVLYSVKRLRDKNSETSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTNDANVEKQSAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVHFRNFNILDSERLVKKGGKGVDLLGSLCDVYDTSEEELREVMEKANGLIEDILKKKPRLASECNSKSLENIDTEGLIYFEGLMEEPSLSASLEILEKDYEDAIHNKGEQLDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKLDSMCSPARTITSPMSPLRSPASHANGTLNSGNTKIAATPVSTAMTTAKWLRTVISPLPAKPSVEMERFLASCDRDVTNDVVRRAHIILEAIFPNTALGERCIAGSLQSASLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSIYNSLIVAKPGLGAEINRLGLLAEPMPSLDAIAVQINFSGIGVSATPNLQRHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLMAFSSIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKTSILFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAGSTMKTDRVPQVNNDSDAPCPGSPKLSPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNGTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPES* 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29089007 29097912 - CsaV3_5G036930.1 Csa05g02874 531261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02874 1024 SMART RB_A_2 420 621 IPR002720 GO:0005634|GO:0051726
Csa05g02874 1024 MobiDBLite consensus disorder prediction 886 918 - -
Csa05g02874 1024 PANTHER BNACNNG22930D PROTEIN 29 1010 - -
Csa05g02874 1024 SUPERFAMILY Cyclin-like 428 623 IPR036915 -
Csa05g02874 1024 MobiDBLite consensus disorder prediction 392 415 - -
Csa05g02874 1024 SUPERFAMILY Cyclin-like 743 913 IPR036915 -
Csa05g02874 1024 Pfam Domain of unknown function (DUF3452) 98 237 IPR024599 -
Csa05g02874 1024 Gene3D - 706 912 - -
Csa05g02874 1024 MobiDBLite consensus disorder prediction 887 901 - -
Csa05g02874 1024 Gene3D - 423 611 - -
Csa05g02874 1024 SMART DUF3452_2 93 237 IPR024599 -
Csa05g02874 1024 Pfam Retinoblastoma-associated protein B domain 745 872 IPR002719 GO:0005634|GO:0051726
Csa05g02874 1024 Pfam Retinoblastoma-associated protein A domain 420 621 IPR002720 GO:0005634|GO:0051726
Csa05g02874 1024 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 29 1010 IPR028309 GO:0006357|GO:0051726
Csa05g02874 1024 Coils Coil 271 295 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31865 PF01858 RB_A 2.00E-63 CL0065 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02874 K04681 - csv:101219810 2025.37