Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02898 ATGGTGTTCCAAGATTTCGACCAAATCTCCGAACGCCGACGAGCCGAGAGGGCACGTAAGTTCCGGAAGAGAGTCATCATTGCCGTCGTCTCGGCCTCTGTCATCCTGCTCGTTGTTGCGGCAGCAGTGTTCGTTCAAGTCTCTTCCTCCAAATCCACCACCAAAAATGATGACAGCGGCAGTAGCAGTGGCAACTCCAAACAACCCCTGCCACCAGAAACAAAACAAGTATCACGTGTCGAGAAAATGATTACCATGATATGCAACTCCACGGACTACAAAGGAAAATGCGAGAGCACGCTGAAGGATGGTGTCCACACAGATCCTAATTCCTCCGACCCAAAAGACCTCATCAAGCTGGCAATCTCGGCAGCTGCGCATGAAGTGAAATCTGCGGTGAAAAAGGCATCAGGGTTCAACTTTGCGACCCCGGAGGAAAAGGGAGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCAATAGAAGAGTTGGAGATGTCAATGAGCGAAGTGAACAAGAAGAATATGGGAAAGCTGACGGCAAAAACGACACCGAATCTGAACAATTGGCTAAGCGCGGTGATGTCGTATCACGAAACTTGTGTTGATGGTTTTCCAGAGGGGAAGATGAAGAGTGACATTGAGAAGGTTGTGAAGGCTGGAAAGGAATTAACAAGTAATTCATTGGCGATGATTTCGCAGGTGGCTTCATTCTTCTCGACGTTTGAGATGCCGGAGGGAGCTGCATCACGACGTCGTCTAATGACCACGAATGGAGTGCCGACTTGGATGGACAGAAATCAGCGGAGGATGTTGAAGGGAGCTGCGGCTGGAGAAAAGCCAAAGCCTAACGTTGTGGTCGCGAAAGATGGCTCTGGAGAATTCAAAACGATCAATGAAGCCTTGGCAGCCATGCCGGCCAAATATGATGGACGGTACGTGATCTACGTGAAGGAAGGAATCTACGATGAGACCGTAGTGATTACTAAAAAGATGGTGAATGTAACAATGTACGGAGATGGATCTCAAAAGAGCATGATCAGTGGAAGCAAGAACTTTGTGGACGGGGTTAGAACCTTCCAAACCGCGACATTTGTGGCACTTGGAGAGGGGTTCTTGGGGCAGGCCATAGGATTCAGAAACATAGCAGGTCCAGAAAAGCACCAAGCCGTAGCGGCGAGAGTCCAAGCGGACAGAGCCATATTCGTGAACTGCCGGTTCGAGGGATACCAAGACACATTATACACCCAAGCACATCGTCAATTCTACAGAAGCTGTCTGATAACAGGAACCATAGACTTCATATTCGGGGACGCGGCAGCCATTTTCCAAAACTGTAACATGATGATAAGAAAGCCGTTGGACAACCAACAGAACATGGTGACAGCACAAGGAAGAACCGACAAACATGAAACCACAGGGATTGTCCTACAAAACTGCAAGATATTGCCGGATAAGACACTTGAGCCTGTGAAGTCACAATTCAAAAGCTACTTGGGAAGGCCATGGAAAGAATTCTCAAGAACCATTGTAATGGAGTCAACGATTGAAGATGTGATTCATCCAGATGGTTGGATGGCTTGGGAAGGGGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACAAAGGGCCAGGGGCTAAGACCGATGCTAGGGTCAAATGGCCTGGCTACAAGGTGATCGATAAGGATGAGGCTGCAAAGTTTACAATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCACCTCGGCTCCTGTTCATGTCGGCCTATTTTGA 1785 48.18 MVFQDFDQISERRRAERARKFRKRVIIAVVSASVILLVVAAAVFVQVSSSKSTTKNDDSGSSSGNSKQPLPPETKQVSRVEKMITMICNSTDYKGKCESTLKDGVHTDPNSSDPKDLIKLAISAAAHEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAIEELEMSMSEVNKKNMGKLTAKTTPNLNNWLSAVMSYHETCVDGFPEGKMKSDIEKVVKAGKELTSNSLAMISQVASFFSTFEMPEGAASRRRLMTTNGVPTWMDRNQRRMLKGAAAGEKPKPNVVVAKDGSGEFKTINEALAAMPAKYDGRYVIYVKEGIYDETVVITKKMVNVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQAIGFRNIAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYTQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMIRKPLDNQQNMVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDVIHPDGWMAWEGDFALKTLYYAEFNNKGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESTSAPVHVGLF* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29464400 29466809 + CsaV3_5G037170.1 Csa05g02898 531285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02898 594 Coils Coil 154 174 - -
Csa05g02898 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 235 IPR035513 -
Csa05g02898 594 CDD PMEI-like_3 87 237 - -
Csa05g02898 594 SUPERFAMILY Pectin lyase-like 281 578 IPR011050 -
Csa05g02898 594 Pfam Pectinesterase 284 578 IPR000070 GO:0030599|GO:0042545
Csa05g02898 594 Pfam Plant invertase/pectin methylesterase inhibitor 83 231 IPR006501 GO:0004857
Csa05g02898 594 PANTHER PECTINESTERASE 14 592 - -
Csa05g02898 594 MobiDBLite consensus disorder prediction 51 77 - -
Csa05g02898 594 Gene3D - 282 594 IPR012334 -
Csa05g02898 594 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 592 - -
Csa05g02898 594 SMART PMEI_2 79 231 IPR006501 GO:0004857
Csa05g02898 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 236 IPR035513 -
Csa05g02898 594 TIGRFAM PME_inhib: pectinesterase inhibitor domain 80 235 IPR006501 GO:0004857
Csa05g02898 594 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Csa05g02898 594 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01764 Csa-Chr2:17190964 Csa05g02898 Csa-Chr5:29464400 6.07E-06 dispersed
Csa03g01487 Csa-Chr3:11030190 Csa05g02898 Csa-Chr5:29464400 7.05E-165 dispersed
Csa05g01336 Csa-Chr5:14133343 Csa05g02898 Csa-Chr5:29464400 9.37E-170 dispersed
Csa05g01337 Csa-Chr5:14171092 Csa05g02898 Csa-Chr5:29464400 9.11E-173 dispersed
Csa05g02314 Csa-Chr5:25618171 Csa05g02898 Csa-Chr5:29464400 1.09E-06 dispersed
Csa05g02898 Csa-Chr5:29464400 Csa06g01790 Csa-Chr6:15830169 2.16E-170 dispersed
Csa05g02898 Csa-Chr5:29464400 Csa01g02747 Csa-Chr1:24351481 1.50E-176 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02898 - - csv:101211510 1115.52