Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02902 ATGAACCAACTTGTGCCATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGACGGTTCAACCGTCATCGACAGTGGAAGAACACGAGGGTCAGGGGCCATCGCGCTAGCTTGCAAATATGTAGGTGGAGGAAGTGATGGGTCGATGGACATATGTGCTAAGGTTTGCCTTATTGATGAGGGTGAGAACGTCATCTTCTATAGCTATGTCAAGCCCGTAACTGCTGTTACAAATTATAGGTATGAAACAACTGGAATTCGTCCAGAACACATTCGAGATGCAATGCCAGTGAAACAAGTTCAAAAGAAAATTCAAGAAATCCTCTACAATGGAGGTGAGAAGGCTAGGATTCTTGTAGGTGATTGCGTCGAAGACGATCTCAAACGCTTACAAATCGGTTACCCATCCTTCATGATAAGGGACACAGCAAATTATCCACCATTGATGAAGTCAAGCAAGCTTTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTAGGATTTGATCTTCAAAATGGTATACAAGATCCTTATGAAGAATGTATCGTTGCTATGAGATTATACAAGAGAATGAGATCACAAGTTCATAGGAAAGAGAACTATCCAATGGCTTCTGACCCACAAAACAAAAATAATTTTGCTATTTGGAGGGAAAATGAGCTTCAAAGGATGAGTCCAGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGATTTGAGGATTTGA 795 40.75 MNQLVPFARNIVDLLILLENISLGLLARFANLGIRDGSTVIDSGRTRGSGAIALACKYVGGGSDGSMDICAKVCLIDEGENVIFYSYVKPVTAVTNYRYETTGIRPEHIRDAMPVKQVQKKIQEILYNGGEKARILVGDCVEDDLKRLQIGYPSFMIRDTANYPPLMKSSKLCNSLKYLAQVYLGFDLQNGIQDPYEECIVAMRLYKRMRSQVHRKENYPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMDLRI* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29538179 29542229 + CsaV3_5G037210.1 Csa05g02902 531289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02902 264 Pfam Exonuclease 69 184 IPR013520 -
Csa05g02902 264 SMART exoiiiendus 50 215 IPR013520 -
Csa05g02902 264 Gene3D - 48 229 IPR036397 GO:0003676
Csa05g02902 264 SUPERFAMILY Ribonuclease H-like 64 211 IPR012337 -
Csa05g02902 264 CDD REX4_like 52 207 IPR037431 GO:0006364|GO:0008408
Csa05g02902 264 PANTHER OS02G0709000 PROTEIN 20 261 - -
Csa05g02902 264 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 20 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02309 Csa-Chr4:23623371 Csa05g02902 Csa-Chr5:29538179 5.06E-22 dispersed
Csa05g02902 Csa-Chr5:29538179 Csa06g02965 Csa-Chr6:25647762 2.59E-06 dispersed
Csa05g02902 Csa-Chr5:29538179 Csa05g02903 Csa-Chr5:29548532 5.56E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02902 - - csv:101218614 496.508