Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g02903 | ATGAACCAATTTGCTCCTTTTGCCACAAACACTTCAGATACTTTGAATCTCTTAGAGAACATCTTATTGAGTCATGAAAATAGGGCACGTTTGGGGAAGACAGAAAGTGGTGGAACAAAAGGCAATAACGAAGCAGTGGCATTGAGTTGCACCATGGTGGGCGCTGGCATCGACGGCTCCCTAAATATTTGCGTTAGGGTTTGTGTTGTTGACCAAAACGAGTCCCTCATCTTTTCTACTTATGTCAACCCAACCCTTCCCATCACAAACTATAGGTATGAATTCACAGGTGTTCGTCCAGAACACTTGAGAGATGCAATGCCATTGAAGCAAGTCCAGAAGAAAATTCAAGAGTTTCTATGCAATGGAGAACAAATGTGGAAGATTCGTCCTGGATCTACTGGAAGAGCAAGAATTCTTGTGGGTCATGGCCTTCAAGAATACCTTACATCTTTGCAAATTGACTACCCTCCCATTATGATCAGGGATACTGCTAAATATCCACCATTGATGAAGACAAGCAAGCTAAGCAATTCTCTCCACTGTTTGACACAAACATATCTTGGATACAGTATGGAAAATGGGAAGAGATTAGAAGGTTATGAGGAGTGTGTTGCAACAATGAGATTGTACATGAGAATGAAATCTCAAGTTCACAAAAGAGAGGAATATCCATTGGCTTCTGATCCACAAAATAAGTTTAATTTTGCAAATTGGAAGCAACTTGAGCTTGAGAAGATGACACCCCAACAGTTGTTGCAAATTTCAAGATCTGATTACTATTGTTGGTGTTTGGATTCCACCCTTTAA | 810 | 40.37 | MNQFAPFATNTSDTLNLLENILLSHENRARLGKTESGGTKGNNEAVALSCTMVGAGIDGSLNICVRVCVVDQNESLIFSTYVNPTLPITNYRYEFTGVRPEHLRDAMPLKQVQKKIQEFLCNGEQMWKIRPGSTGRARILVGHGLQEYLTSLQIDYPPIMIRDTAKYPPLMKTSKLSNSLHCLTQTYLGYSMENGKRLEGYEECVATMRLYMRMKSQVHKREEYPLASDPQNKFNFANWKQLELEKMTPQQLLQISRSDYYCWCLDSTL* | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 29548532 | 29551549 | + | CsaV3_5G037220.1 | Csa05g02903 | 531290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g02903 | 269 | SUPERFAMILY | Ribonuclease H-like | 47 | 218 | IPR012337 | - | |
| Csa05g02903 | 269 | PANTHER | OS02G0709000 PROTEIN | 35 | 267 | - | - | |
| Csa05g02903 | 269 | SMART | exoiiiendus | 44 | 220 | IPR013520 | - | |
| Csa05g02903 | 269 | Gene3D | - | 40 | 231 | IPR036397 | GO:0003676 | |
| Csa05g02903 | 269 | Pfam | Exonuclease | 61 | 167 | IPR013520 | - | |
| Csa05g02903 | 269 | PANTHER | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED | 35 | 267 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g01733 | Csa-Chr4:16842382 | Csa05g02903 | Csa-Chr5:29548532 | 5.43E-71 | dispersed | |
| Csa05g02903 | Csa-Chr5:29548532 | Csa04g02309 | Csa-Chr4:23623371 | 9.13E-16 | dispersed | |
| Csa05g02902 | Csa-Chr5:29538179 | Csa05g02903 | Csa-Chr5:29548532 | 5.56E-109 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g02903 | - | - | csv:101218380 | 511.531 |