Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02906 ATGATGTCGGACGCTTTGATCTTCAACCGGTCTCCAGGTCATGCCAACATGTTGTTTTTCGGAAGTAGTGATTCCATTCCTCGTGGACCAAGTTTCATGATGGGGATGGAGGAAACTTCAAAGAGGCGCTCATTTTTCAGCTCTCCGGATGACTTGTTTGATGATGATTACTATGATGACCAGCCACCTGAGAAGAAGCGCCGGCTGACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGTCAGAGAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAGAACCGCCGAGCTAGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCTTTTCGTTCTAGCTACGACTTTATTGCTAAGGAGAATGAAAGGCTAAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCACGCTAAGAATCCTGATCCGTTTCTGGAGGATCAACTCCTTGTTCCTGTTGTGCAACAGAGCATTAAGATTGAAGACCACCATAGTTGCAGGAGCAATGGAAGCGCTGTGCTGGACGAGGACGGTCCTCATCTCCTGGACAGTGGGGATTCATACATCTTGAGCAATGACTATGATGGCTGTGTTTTGCCAACTTTTGGCGTGAACTCGGAGGAGGAAGATGTGAGTGACGACGGTCAGGGTTACTTCTCGGACGTTTATACGACAGTCGATCAGCAGACTCACGAGGGAGAGCCTCTGACCTGGTGGGACTGGACGTCGTAA 837 48.03 MMSDALIFNRSPGHANMLFFGSSDSIPRGPSFMMGMEETSKRRSFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVASLTEKLQAKEVVESSFHAKNPDPFLEDQLLVPVVQQSIKIEDHHSCRSNGSAVLDEDGPHLLDSGDSYILSNDYDGCVLPTFGVNSEEEDVSDDGQGYFSDVYTTVDQQTHEGEPLTWWDWTS* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29571581 29574391 + CsaV3_5G037250.1 Csa05g02906 531293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02906 278 Gene3D - 58 126 - -
Csa05g02906 278 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Csa05g02906 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Csa05g02906 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Csa05g02906 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Csa05g02906 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Csa05g02906 278 Coils Coil 140 167 - -
Csa05g02906 278 CDD homeodomain 65 121 IPR001356 GO:0003677
Csa05g02906 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 261 - -
Csa05g02906 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 261 IPR045224 GO:0003700
Csa05g02906 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Csa05g02906 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Csa05g02906 278 SMART HOX_1 63 124 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03923 Csa05g02906 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03923 Csa-Chr3:34379311 Csa05g02906 Csa-Chr5:29571581 1.21E-80 dispersed
Csa05g02906 Csa-Chr5:29571581 Csa06g03138 Csa-Chr6:26787699 1.74E-39 dispersed
Csa05g02906 Csa-Chr5:29571581 Csa01g00793 Csa-Chr1:5021575 1.18E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31867 PF00046 Homeodomain 3.50E-17 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02906 K09338 - csv:101210106 533.102