Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02908 ATGGATACAACCTTGTTCTGGGGTCGTCCTGAAAAGAGAGATTCATGGAGAACAATCTTCACTTTAGCTTATCAGAGCTTAGGGGTTGTTTATGGGGATTTAAGCACTTCTCCTCTGTATGTTTACAAAAGCACTTTTGCTGAGAATCTTCAACACTCTGAGACTAATGAGGAGGTTTATGGAGTTCTTTGCTTTGTGTTTTGGACTTTGACACTTATTCCTTTACTTAAATATGTGTTTATAGTTCTTAGAGCTGATGATAATGGTGAAGGGGGGACTTTTGCTCTGTATTCATTGCTTTGTCGCCATGCTCGATTGAGCTCTCTCCCAAATCATCAACTAGCTGATGAGGAACTTTCTGCATATACAATTGATAGGCCTCAAACTGAAAACACTAGTAATTTTAGTTTTAGTTCTTGTTTGAAATCAACTTTGGAGAAATGTAAAGTTCTGCAAAAAATGTTGCTTGTTCTTGCTTTGATTGGGACTTGCATGGTTATTGGAGACGGTGTTCTCACACCAGCAATCTCAGTTTTCTCAGCTGTTTCTGGGCTTGAGTTATCTATGGCTAAGGAACATCACCAGTATATCGAAGTCCCTCTAGCGTGTGGTATATTGGTATTCTTATTCGCATTGCAACATTACGGAACACATCAAGTCGGGTTCTTGTTTGCTCCTGTTGTAATTGTATGGCTTCTATGCATCAGTGCTATTGGTTTGTATAATATCTTCTATTGGAATCCCCTGGTTTACAAAGCACTCTCCCCATACTACATGTATAAGTTCTTGAAAAAAACCAAAAAGCAGGGTTGGATGGCATTGGGCGGAATCCTCTTGTGTATAACAGGTTCAGAAGCTATGTTTGCTGATCTTGGGCACTTCTCACAGTTTTCTATCAAGCTTGCTTTCACTTTTGCGGTTTATCCATCCTTGGTTCTTGCATATATGGGACAAGCTGCATATCTTTCTAAGCATCACAATCTCGACAATGAATATAGAATCGGATTCTATGTTTCTGTTCCTGAGAAGGTAAGATGGCCAGTTCTTGCAATAGCAATACTTGCAGCAGTTGTGGGTAGTCAAGCCATCATCACTGGCACATTTTCGATCATCAAACAATGTTCTGCGTTGGGTTGTTTTCCAAGGGTGAAGATCATCCATACGTCTTCGAAAATACATGGCCAGATTTACATTCCCTTGATCAATTGGATACTAATGATATTATGTTTGGCTGTTACTATTGGATTTAGAGACACAAAACGACTTGGCAATGCAGCAGGGTTGGCAGTTATTACTGTTATGCTCGTTTCGACGTGTCTGATGTCGCTTGTCATTGTATTATGTTGGCATAAAAGTGTGTTGCTTGCCATAGCTTTCATACTCTTCTTTGGCTCCATAGAAGCTCTCTATTTCTCTGCTTCTCTTATTAAGTTCTTTGAAGGGGCTTGGGTTCCTATTGCTCTTTCAATGACATTCCTTGTGGTTATGTATGTTTGGCACTATGGAACTGTGAAGAAATATGAGGCTGATGTTGAAAACAAAGTCCCTATCAATTGGCTCCTCGGTATAGGACCCAAAATCGGGATCGTTCGAGTCCGTGGGATCGGCCTTGTACATACCGAACTCGTCTCGGGGATCCCTGCCATTTTCTCCCATTTCGTCACCAACCTTCCAGCCTTCCACCAAATTCTAGTCTTCCTTTGCATCAAATCTGTCACAGTGCCTCATGTGAGGCCTGAGGAAAGGTTTTTAGTTGGAAGAGTTGGACCAAAGGAGTATCGACTCTACCGTTGCATCGCACGGTATGGCTACCGTGACATGCACAAGGACGACTTGGAGTTTGAGAGAGATCTTGCTTGCAGCATTGCAGAATTCATACGGTCCGAGAGAACAGAAAGCAACAATTTTAGACACGAAGACTTGGACGACAGTGAAAGAATGACAGTGATTGGTACTTCATCAACCCAACTAGACGGAATACAAATGTGTGAAAACGAAACATATGCTTCGCCAATCATTGGGACTTCAGATATAATAAAGTCAGAGGCGTTGAGGAAAAGAGTAAGGTTTGTTCTTCCAGAGAGTCCGAAAATGGACATCGGTACTAGGGGAGAGCTGGAAGAGTTGATGGAGGCGAGGGAGGCAGGAATAGCATTCATAATGGGACATTCATATGTGAAGGCAAAGAAAGGATCAGGTTGGATGAAGAAGCTTGTGATTAACTATGGATATGATTTCTTGAGAAAAAATTCAAGAGGGCCATCTTATGCTTTGAGCATTCCCTATGCTTCTACTCTTGAGGTTGGTATGGTTTATTATGTTTAG 2325 41.42 MDTTLFWGRPEKRDSWRTIFTLAYQSLGVVYGDLSTSPLYVYKSTFAENLQHSETNEEVYGVLCFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARLSSLPNHQLADEELSAYTIDRPQTENTSNFSFSSCLKSTLEKCKVLQKMLLVLALIGTCMVIGDGVLTPAISVFSAVSGLELSMAKEHHQYIEVPLACGILVFLFALQHYGTHQVGFLFAPVVIVWLLCISAIGLYNIFYWNPLVYKALSPYYMYKFLKKTKKQGWMALGGILLCITGSEAMFADLGHFSQFSIKLAFTFAVYPSLVLAYMGQAAYLSKHHNLDNEYRIGFYVSVPEKVRWPVLAIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPLINWILMILCLAVTIGFRDTKRLGNAAGLAVITVMLVSTCLMSLVIVLCWHKSVLLAIAFILFFGSIEALYFSASLIKFFEGAWVPIALSMTFLVVMYVWHYGTVKKYEADVENKVPINWLLGIGPKIGIVRVRGIGLVHTELVSGIPAIFSHFVTNLPAFHQILVFLCIKSVTVPHVRPEERFLVGRVGPKEYRLYRCIARYGYRDMHKDDLEFERDLACSIAEFIRSERTESNNFRHEDLDDSERMTVIGTSSTQLDGIQMCENETYASPIIGTSDIIKSEALRKRVRFVLPESPKMDIGTRGELEELMEAREAGIAFIMGHSYVKAKKGSGWMKKLVINYGYDFLRKNSRGPSYALSIPYASTLEVGMVYYV* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29584874 29588969 + CsaV3_5G037270.1 Csa05g02908 531295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02908 774 PANTHER POTASSIUM TRANSPORTER 6 10 773 - -
Csa05g02908 774 Pfam K+ potassium transporter 24 606 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa05g02908 774 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 10 773 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa05g02908 774 TIGRFAM kup: potassium uptake protein 22 774 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01999 Csa-Chr3:15871980 Csa05g02908 Csa-Chr5:29584874 0 dispersed
Csa05g00886 Csa-Chr5:6809332 Csa05g02908 Csa-Chr5:29584874 0 dispersed
Csa05g01229 Csa-Chr5:12915450 Csa05g02908 Csa-Chr5:29584874 0 dispersed
Csa05g02350 Csa-Chr5:25816821 Csa05g02908 Csa-Chr5:29584874 0 dispersed
Csa05g02908 Csa-Chr5:29584874 Csa04g00208 Csa-Chr4:1222425 0 dispersed
Csa05g02908 Csa-Chr5:29584874 Csa03g03914 Csa-Chr3:34316948 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02908 K03549 - csv:101218141 1541.94