Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02916 ATGGCGTTAACTGGAAGAAGCTTAATGGAAGGAGTTCTTCCATTTCCGGCGATGATGGCGATGGAGTGTATAAACGTCGGTCTCAACACACTTTTTAAAGCCGCCACTGCCGCCGGGATGAGCCACCACGTCTTCGTCGTTTACTCTTACTCTTTCGCCGCCCTTCTGCTCCTCCCTTCTCCTTTCATCTCTCGAACATCCACTCGCCTTCCACCTCTCAATTTCTCCATAACTTCAAAGATTGCTCTGCTTGGACTAATCGGTTCTTGTTCGCAGATCATGGGATACACAGGAATCAATTATAGTTCTCCAACACTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTCGCCATCATTTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCAAAAGTGATGGGCACAATAATATCAATATCAGGGGCATTTGTGGTAACATTTTACAAGGGTCCAAGAATCATATTCTCATCTTCACCAACCATTTCTCTTTCACTTCATCACAATTCACAACAACTATCCTCTTCTGATTCTAATTGGGTTATTGGTAGCCTTCTCTTGACTGCTGAATATATCCTTGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGGCAACAGTGGTCTTCTTCTACAACTTAACTGTGGCCATCATAGCTGCATTTGTAGGTTTGATTTTAGAGAAAGATCCAAGTGCTTGGATTTTGAGGCAAAATACAGCATTAGCCTCTATTTTATGCTCTGGACTTTTTGGATCATGTTTAAACAATACAGTTCATACATGGGCCCTCCGATTGAAAGGGCCGGTGTTCGTAGCAATGTTCAAGCCGTTGTCGATTGTTGTTGCTATAGTAATGGGTGTTCTGTTTCTTGGTGATTCTCTATATCTTGGAAGTCTTATTGGAGCATCCATAATATCCATAGGGTTTTATACTGTAATGTGGGGAAAAGCAAAAGAAGAAATGGGTGTTGGAGAAGAAAAACAAGAAGGCCATAGCCATAATAATCTTGATGGTAACAAGGAATCAAATGAAGATCAGAGAGTACCTCTTCTTGGAAGCTACAACAGATACAGTGAAGATCATGTATGA 1134 41.45 MALTGRSLMEGVLPFPAMMAMECINVGLNTLFKAATAAGMSHHVFVVYSYSFAALLLLPSPFISRTSTRLPPLNFSITSKIALLGLIGSCSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVVLKSNSSQAKVMGTIISISGAFVVTFYKGPRIIFSSSPTISLSLHHNSQQLSSSDSNWVIGSLLLTAEYILVPLWYIVQTKIMKEYPEEATVVFFYNLTVAIIAAFVGLILEKDPSAWILRQNTALASILCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYTVMWGKAKEEMGVGEEKQEGHSHNNLDGNKESNEDQRVPLLGSYNRYSEDHV* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29640781 29647337 + CsaV3_5G037350.1 Csa05g02916 531303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02916 377 MobiDBLite consensus disorder prediction 338 363 - -
Csa05g02916 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 228 332 - -
Csa05g02916 377 PANTHER WAT1-RELATED PROTEIN 11 349 - -
Csa05g02916 377 Pfam EamA-like transporter family 201 328 IPR000620 GO:0016020|GO:0016021
Csa05g02916 377 Pfam EamA-like transporter family 26 155 IPR000620 GO:0016020|GO:0016021
Csa05g02916 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 158 - -
Csa05g02916 377 MobiDBLite consensus disorder prediction 338 359 - -
Csa05g02916 377 PANTHER WAT1-RELATED PROTEIN 11 349 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03910 Csa05g02916 CCT
Csa03g03910 Csa05g02916 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03910 Csa-Chr3:34287103 Csa05g02916 Csa-Chr5:29640781 4.55E-96 dispersed
Csa03g03911 Csa-Chr3:34294356 Csa05g02916 Csa-Chr5:29640781 2.39E-93 dispersed
Csa05g02357 Csa-Chr5:25883079 Csa05g02916 Csa-Chr5:29640781 5.10E-71 dispersed
Csa05g02916 Csa-Chr5:29640781 Csa04g01808 Csa-Chr4:17728900 5.94E-58 dispersed
Csa05g02915 Csa-Chr5:29627127 Csa05g02916 Csa-Chr5:29640781 4.08E-90 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02916 - - csv:101208880 711.449