Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02920 ATGGCTCCCAGCTCTGTTGTTGTCACAATTGAGAAGCATAATAGCTTCCCTTTAGTGGAAATCAATGGCTCTGAATCTTTGTTACTTCCTGAAAAGCAAAAGGCTGCTAGTCCTAAGCAACTCACATGGGTTCTTCTTCTTAAAGCTCATAGAGCTCTGTTTTTCTTCTCATGGTTAGCTATGACTGTGAAGGCTGTTTTTGCTTCTGTTAAGAAACGCATTGCACATGCGGGTCTTAATGAAAATGATTCTAAAAACCGTGGGAAGTTGTATAGATTCATCAAGGGGTTTCTTGTTTTTTCTATTGTGGGTTTGATTTTTGAAGTTGTTGCGCATTTCAAGAAGTGGAATCTAGGAATGATTCAGCCATTGGAGGCTGAAGTTCATGGGATTCTTCAGTGGTTTTATGTTTCTTGGCTTGCGTTTCGTATTGATTACATTGCTCCATTGGTATTAATGCTTTCGAAATTCTGCGTTGTTTTGTTCTTGATTCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGGTGCTTTTGGATTAAGTACAAGAAAATCAAACCCATGATTCAAGATGATGCTTATGATTTGGAAGATGCTTCAACTTTTCCTATGGTTCTTGTTCAAATCCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCAATCGCTGCTGCTTGTGAGCTTGATTGGCCAAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCAGACGATGGAAATCTCCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAACATTGTTTATAGACATAGATTGATTCGAACTGGATACAAAGCTGGGAATCTCAAGTCCGCCATGGCTTGTGATTATGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAATCCAGATTTCCTTAAACTATGTATCCCTCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTTCAAGCTCGTTGGGCGTTTGTTAACAAGGAAGAAAACTTACTAACAAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGAGTTTTCCTGAATTTCTTTGGATTCAATGGAACCGCAGGCGTTTGGAGAACGAAAGCACTTGAAGAATCCGGTGGCTGGCTCGAGCGAACAACCGTGGAAGATATGGATATTGCTGTTCGAGCTCACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTTAAAGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTATAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTTCCTTCTATCATTACTTCAAAGATATCAATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTGTTGAGAAAACTCATACTTCCATTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTAACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTACATCCCAGTTTTCATGTCCTTCCTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAAAACACGATGTCCGTCACAAAGTTCAATGCCATGGTTTCGGGGCTATTCCAGCTTGGAAGTTCATACGAATGGGTAGTGACGAAAAAGACAGGACGATCATCGGAATCCGACTTCTTAGCATTGGCAGAACGAGAGTCGAAAACATCAAACGATGAGAAGATTTTAAGGAGACATTCAGAGTCGGGGCTTGAGTTGTTGAGTAAAATGAACCAAGAAGAGATAAAGCAAAAAGTGGCTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAACTTGCTCTTGCTTTTCTATTGCTCACTGCATCAGCTAGAAGCTTGCTGTCAGAACATGGAGTTCATTTCTATTTCTTGCTTTTTCAAGGTTTGTCATTCCTGGTGGTGGGTTTGGACTTGATTGGTGAACAAATGAACTGA 2007 39.76 MAPSSVVVTIEKHNSFPLVEINGSESLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKAVFASVKKRIAHAGLNENDSKNRGKLYRFIKGFLVFSIVGLIFEVVAHFKKWNLGMIQPLEAEVHGILQWFYVSWLAFRIDYIAPLVLMLSKFCVVLFLIQSLDRLVLCFGCFWIKYKKIKPMIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLCIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSFLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLALAERESKTSNDEKILRRHSESGLELLSKMNQEEIKQKVASKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLVVGLDLIGEQMN* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29658170 29661151 - CsaV3_5G037390.1 Csa05g02920 531307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02920 668 Coils Coil 602 622 - -
Csa05g02920 668 PANTHER - 1 667 - -
Csa05g02920 668 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
Csa05g02920 668 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
Csa05g02920 668 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
Csa05g02920 668 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 1 667 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02920 K20887 CSLC4; xyloglucan glycosyltransferase 4 [EC:2.4.1.-] - csv:101208151 1309.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04414 Csa-Chr3:38476463 Csa05g02920 Csa-Chr5:29658170 0 dispersed
Csa05g02920 Csa-Chr5:29658170 Csa07g01566 Csa-Chr7:16099790 0 dispersed
Csa05g02920 Csa-Chr5:29658170 Csa04g02506 Csa-Chr4:24889393 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g01212 . 206 367 REM Transcription Factor Family AT1G49480 71.0 1.8e-56 216.1
Csa03g04414 . 1 696 REM Transcription Factor Family AT2G24630 77.0 0.0e+00 1086.2
Csa05g02920 . 6 669 REM Transcription Factor Family AT2G24630 68.9 1.1e-264 909.4
Csa04g02506 CCT 1 707 REM Transcription Factor Family AT2G24630 64.0 1.2e-263 906.0
Csa02g01868 CCT 5 700 REM Transcription Factor Family AT2G24630 65.8 6.2e-257 883.6
Csa07g01566 . 5 695 REM Transcription Factor Family AT2G24630 61.9 1.4e-245 845.9
Csa03g04414 . 1 696 REM Transcription Factor Family AT2G24630 77.0 0.0e+00 1086.2
Csa05g02920 . 6 669 REM Transcription Factor Family AT2G24630 68.9 1.1e-264 909.4
Csa04g02506 CCT 1 707 REM Transcription Factor Family AT2G24630 64.0 1.2e-263 906.0
Csa02g01868 CCT 5 700 REM Transcription Factor Family AT2G24630 65.8 6.2e-257 883.6
Csa07g01566 . 5 695 REM Transcription Factor Family AT2G24630 61.9 1.4e-245 845.9
Csa03g04414 . 1 696 REM Transcription Factor Family AT2G24630 77.0 0.0e+00 1086.2
Csa05g02920 . 6 669 REM Transcription Factor Family AT2G24630 68.9 1.1e-264 909.4
Csa04g02506 CCT 1 707 REM Transcription Factor Family AT2G24630 64.0 1.2e-263 906.0
Csa02g01868 CCT 5 700 REM Transcription Factor Family AT2G24630 65.8 6.2e-257 883.6
Csa07g01566 . 5 695 REM Transcription Factor Family AT2G24630 61.9 1.4e-245 845.9
Csa02g01212 . 206 367 REM Transcription Factor Family AT1G49480 71.0 1.8e-56 216.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33