Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02927 ATGGAGTTTCAAGAAGGTTTGAAGAAGTTTATGTTTCATGAAGATGTTAAACCCAACTGGGTTTTTGGGAAGGATTCTCCATCTGTTGCTGTTTCGGAGATAAGTAGTACTCCTAGACGGAAATGGCGGATCTTCAATCGGTCTTCTTCTTCACCATTTCCGTCAAAACCAAAACCACCCCATTTTAAGGAAATACCTAAAGAATTGCTCTGTCCGATTACTGGGTCTTTAATGGCGGATCCTGTGATTGTTTCCTCTGGTCATACTTTTGAAGCTGCTTGTGTTCAGGTTTGTAAAGATTTAGGGGTGAAACCGACTTTGTTAGATGGTTCTAAGCCGGATTTCTCATCTGTGATTCCAAATCTGGCTCTTAAATCCACCATTTTCAATTGGTGTAAAAATTCCTCTTCTGAACCTCCTCAACCCCTTGATTTCTCCTCCGCTGAAAAGCTTGTTCGTAAATTTGTCGCGGCTCATAGTAAAAGCGATGAGGAATTGATTCAAGGGGTTGCTGAGACTCCTGTGGTTCGATTCAACCATGCCGCCACTGAAGTTGCTCGTCGAAGTTCTCATTTTCATTCGAGTTCCGATGAATCTGTAAGCGCCGTTGTTCCTACTCTGCCTCTTCCTCTTGCGATTCGCCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGATAACGAGATCATTGGTACTCTTAACTTGCCTGAAGAGGAAGAGATCGTCGTGAAGCTTAAAAGTTCTCAGGTTATTGAGATTGAAGAGGCTGTGACGACGTTGAGAAAAATCACGAGAACTCGAGAGGACAGTAGAGTTCATCTCTGTTCTCCTATGATTCTCTCTGCTTTGCGATCTCTCATCGTCTCAAGGTACTCTGGCGTTCAAGTGAATTCCGTTGCGGCGCTTGTAAATCTATCTTTAGAGAATTTGAACAAGGTGAAGATCGTGCGGTCGGGGATTCTCCCTAATTTGATCGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAAGAACATGCTGCCGGCGCCATTTTCAGCTTAGCTCTCGAAGATAACAACAAGACGGCGATAGGCGTATTGGGTGCTCTACCACCATTGATAAGGCTGTTGTTATCCAACTCGGAGCAAACTCGGCACGACTCAGCTCTTGCTCTTTACCACTTATCCCACGTTCAGAGCAACCGTTCGAAGTTAGTGAAACTTGGGTCGGTGCCGATACTTCTCGGGATGGTGAAATCCCGTCACATGGCCGGCCGTATTTTGCTGACTTTGTGTAATTTAGCAGCTTGTTTTGAGGGCCGGGCGGCGTTGTTAGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGAGAAAACGAGTTGGACTCTGAATCAACTAGGGAGAGTTGTGTGGCGGTTCTGTTTGGACTGAGTTTCGGCGGATTGAGGTTCAAAGGTCTGGCAAAAACCGCCGGAGCAATGGATGTTTTTATGGCAGTGGAGAAAAATGGGAGTGAAAGATCAAAAGAGAAGGTGAAGAGGATGATGGAGTATATGAAAGCCAGAGATGAAGAAGCTGAGGATGTGAATTGGGAGGAATTGCTCGACTCAGGTTGTTTCGGTAGCCGAAGTCGGTGTCGACTTGGTGCCGGAATGGACAGATCCACCGCAAACTCATCAGAATTCTGA 1665 46.31 MEFQEGLKKFMFHEDVKPNWVFGKDSPSVAVSEISSTPRRKWRIFNRSSSSPFPSKPKPPHFKEIPKELLCPITGSLMADPVIVSSGHTFEAACVQVCKDLGVKPTLLDGSKPDFSSVIPNLALKSTIFNWCKNSSSEPPQPLDFSSAEKLVRKFVAAHSKSDEELIQGVAETPVVRFNHAATEVARRSSHFHSSSDESVSAVVPTLPLPLAIRPSCCSSSSSSDNEIIGTLNLPEEEEIVVKLKSSQVIEIEEAVTTLRKITRTREDSRVHLCSPMILSALRSLIVSRYSGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALEDNNKTAIGVLGALPPLIRLLLSNSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPILLGMVKSRHMAGRILLTLCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSFGGLRFKGLAKTAGAMDVFMAVEKNGSERSKEKVKRMMEYMKARDEEAEDVNWEELLDSGCFGSRSRCRLGAGMDRSTANSSEF* 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29699696 29701360 - CsaV3_5G037460.1 Csa05g02927 531314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02927 554 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Csa05g02927 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Csa05g02927 554 PANTHER U BOX DOMAIN-CONTAINING 39 542 - -
Csa05g02927 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 318 355 IPR000225 GO:0005515
Csa05g02927 554 SUPERFAMILY ARM repeat 243 490 IPR016024 -
Csa05g02927 554 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Csa05g02927 554 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 39 542 - -
Csa05g02927 554 Pfam Armadillo/beta-catenin-like repeat 350 387 IPR000225 GO:0005515
Csa05g02927 554 Pfam Armadillo/beta-catenin-like repeat 310 346 IPR000225 GO:0005515
Csa05g02927 554 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Csa05g02927 554 SUPERFAMILY RING/U-box 60 139 - -
Csa05g02927 554 CDD RING-Ubox 70 105 - -
Csa05g02927 554 SMART arm_5 266 306 IPR000225 GO:0005515
Csa05g02927 554 SMART arm_5 307 347 IPR000225 GO:0005515
Csa05g02927 554 SMART arm_5 428 471 IPR000225 GO:0005515
Csa05g02927 554 SMART arm_5 389 427 IPR000225 GO:0005515
Csa05g02927 554 SMART arm_5 348 388 IPR000225 GO:0005515
Csa05g02927 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Csa05g02927 554 Gene3D - 235 510 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00180 Csa-Chr1:1168281 Csa05g02927 Csa-Chr5:29699696 7.02E-170 dispersed
Csa05g02927 Csa-Chr5:29699696 Csa06g03458 Csa-Chr6:28405526 2.00E-37 dispersed
Csa01g00824 Csa-Chr1:5199945 Csa05g02927 Csa-Chr5:29699696 6.04E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02927 - - csv:105434412 1030.78