Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02951 ATGAAGACTTTCACCTTCTTCCTCAAATGGGTTTCTGTTTCTCTTCTTCTTTTGCTCTCTGTTTCTCCATCTTTTTCTGTAGTTCCTGAAGATGATATAAGGTGTCTTCGTGGTGTTAAGAATGCTCTTGTTGATCCTATTGGAAGACTCAGTTCATGGGATTTCAAGAACACATCTGTTGGTCATCTCTGCGACAAATTCGTTGGTCTTTCCTGTTGGAATGACCGTGAGAATCGTATTCTCAGCCTTGAACTCAAAGATATGAAGCTCTCTGGTTCGATTTCTGAAGACTTACAGTACTGTGTAAGCTTGCAGAAACTGGATCTGTCCGGGAATAGCTTTTCCGGCGAGATCCCACCTCATATTTGTGAGTGGCTTCCGTATTTGGTTAGTATGGATTTGTCTAACAATCAATTTACTGGTTCTATTCCGGCTGATCTTGCCAGATGTTCTTATCTGAATTCGTTGATTTTGTCTGATAATGAACTTTCTGGTACAATACCAGTTGAGCTTACGAGTTTGGGTAGGCTTAACAAATTTTCTGTTGCCAATAATCAACTTACTGGGACGATTCCATCATTTTTTGATAAATTTGGGAAGGAGGATTTTGATGGGAATAGTGATTTATGTGGAGGGCCTGTTGGATCTAGTTGTGGTGGGTTGAGTAAGAAGAATCTTGCGATTATTATAGCTGCTGGTGTGTTTGGTGCTGCAGCTTCTCTGTTGTTAGGTTTTGGGTTATGGTGGTGGTATCATTCTAGAATGAATATGAAGAGGAGAAGGGGATATGGAGATGGGATTAGTGGGGATTGGGCTGATAGATTGAGAGCTTATAAGCTTGTTCAAGTTTCTTTGTTTCAAAAGCCTCTTGTGAAAGTTAGATTGGCTGATTTGATGGCTGCTACTAACAATTTCAATTCGGAAAACATTATAGTTTCTTCTAGAACAGGGACTACATATAGAGCTGTTCTTCCAGATGGTTCTGTACTTGCTATTAAGCGGCTCAATACTTGCAAGCTCGGCGAGAAGCTGTTTCGCATGGAGATGAATCGACTAGGATCGATAAGGCACCCAAATTTGACACCCCTTTTGGGCTTTTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCTAATGGGACTTTGTCTTCTTTGTTACATGGAAATGATGAGATATTGGATTGGGCAACTAGGTTTAGGATTGGTCTTGGTGCAGCTAGAGGTCTGGCTTGGCTTCACCATGGATGCCAACCCCCATTTATGCATCAAAACATATGCTCTAGTGTAATTCTTGTGGATGAAGATTATGATGCTAGGATCATGGATTTTGGATTGGCAAGATTGATGGCTTCAGATTCTCAAGACAGTAGTTTTGTTAATGGAGATTTAGGGGAACTGGGCTACGTTGCTCCCGAATACCCAAGCACAATGGTTGCTTCTCTGAAAGGGGATGTTTATGGATTTGGAGTTGTGCTTTTGGAGTTGATCACTGGCCAGAAACCTCTAGAAGTCACCAAAGCCGAGGAAGGCTACAAGGGTAACTTGGTGGATTGGGTTAATCAGCTAAGTACGTCGGGTCGAATTAAGGATGTAATTGATAGAGATCTTTGTGGGAAAGGGAATGATGAAGAGATCTTACAATTTCTGAAAATTACAATGAATTGCATTGTTTCTCGACCTAAAGACAGGTGGTCTATGTATCAAGTTTATCAATCAATGAGAACCATGGCTAAAGACTACAGTTTCCCCGAACCAGATGATGAATTCCCACTTTTACTTGGCAAGGGAGATAACGATCCCATGTAG 1815 40.99 MKTFTFFLKWVSVSLLLLLSVSPSFSVVPEDDIRCLRGVKNALVDPIGRLSSWDFKNTSVGHLCDKFVGLSCWNDRENRILSLELKDMKLSGSISEDLQYCVSLQKLDLSGNSFSGEIPPHICEWLPYLVSMDLSNNQFTGSIPADLARCSYLNSLILSDNELSGTIPVELTSLGRLNKFSVANNQLTGTIPSFFDKFGKEDFDGNSDLCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKRRRGYGDGISGDWADRLRAYKLVQVSLFQKPLVKVRLADLMAATNNFNSENIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGSIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNDEILDWATRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDEDYDARIMDFGLARLMASDSQDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTKAEEGYKGNLVDWVNQLSTSGRIKDVIDRDLCGKGNDEEILQFLKITMNCIVSRPKDRWSMYQVYQSMRTMAKDYSFPEPDDEFPLLLGKGDNDPM* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29855722 29858647 + CsaV3_5G037700.1 Csa05g02951 531338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02951 604 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 598 - -
Csa05g02951 604 SUPERFAMILY L domain-like 29 204 - -
Csa05g02951 604 Gene3D Phosphorylase Kinase; domain 1 265 379 - -
Csa05g02951 604 Pfam Leucine Rich Repeat 103 123 IPR001611 GO:0005515
Csa05g02951 604 Gene3D Ribonuclease Inhibitor 30 220 IPR032675 -
Csa05g02951 604 PANTHER RECEPTOR-LIKE PROTEIN 55 1 598 - -
Csa05g02951 604 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
Csa05g02951 604 Pfam Protein tyrosine and serine/threonine kinase 330 573 IPR001245 GO:0004672|GO:0006468
Csa05g02951 604 Gene3D Transferase(Phosphotransferase) domain 1 380 590 - -
Csa05g02951 604 ProSiteProfiles Protein kinase domain profile. 305 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02951 604 SUPERFAMILY Protein kinase-like (PK-like) 282 575 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02951 Csa-Chr5:29855722 Csa07g01618 Csa-Chr7:16693156 1.04E-179 dispersed
Csa06g03050 Csa-Chr6:26213850 Csa05g02951 Csa-Chr5:29855722 5.31E-31 dispersed
Csa07g01617 Csa-Chr7:16689067 Csa05g02951 Csa-Chr5:29855722 1.84E-51 dispersed
Csa05g02951 Csa-Chr5:29855722 Csa05g03065 Csa-Chr5:30756982 5.08E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78291 PF07714 PK_Tyr_Ser-Thr 7.30E-30 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02951 - - csv:101209638 1176.0