Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02971 ATGGGTTTAGCTCCTAATGATTCCAAGGTTGAGACATGGATTGAGGGTAAGTCAAGAACAGCTAGCGAGAAGAAGAAGAAGAAGGAGAATGAGTTGGAGGAGGAGACTGGATGTTGGGTTAAGTTGAAGTTTATTGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTCTGAGTGGATCAAAGGTTGATAGCTTTATCAGTGGCACTAGTACCCATTGCGATAGTAAATCTAAACTGGACGAAAAAAGAGATATACTGGCTACTGCATTGGGGTCATCAGCGACAACTGATAATGCCGAAAGTAGTTCGTCCACTCCCAAGCTCAGTGCTGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACAAGAAATTTCCGACCCGAGAGCCTTCTTGGTGAGGGAGGTTTTGGTTGTGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACAGTTGCAGTCAAGACTCTTAATCACGATGGCCTACAAGGTCACAAGGAGTGGATGGCTGAAGTTAACTTCCTCGGTGACCTCAACCATTCTAATCTTGTAAGATTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTATTAGTTTATGAGTTTATGCCTCGTGGAAGTTTGGAGAACCACCTCTTCAGAAGGCCCTTGCCACTTCCTTGGTCTATCAGATTGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGATTTTAAAACGTCTAATATTCTATTAGATGCGGACTACAATGCTAAACTCTCAGACTTTGGACTTGCAAAAGATGGCCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACATATGGTTATGCAGCTCCAGAATATGTGATGACTGGGCATTTGACATCAAAAAGCGATGTCTACAGCTTTGGAGTTGTCTTGCTTGAAATGCTAACCGGTCGAAGATCGATGGATAAAAATAGACCGAATGGGGAACACAACCTTGTTGAATGGGCTAGACCCCTGCTTGGAGACAAGAGGAAGTTCTACCGGCTTATAGATCCTCGCCTCGAATGTCACTTCTCAATCAAAGGTGCACAAAAAGCTGCAGAGCTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTCCGATGAGTGAAGTTGTTGAAATTTTAAAACCTTTGCCAAACCTCAAAGACATGGCAAGTTCTTCCTATTACTTCCAAACCATGCAAGCAGACCGTGCTAGGTCCACCCCCAATGCTAAAAGTGTCGTCCGCACGCAGTCGATGTTTGTGGCAAGGAACGGGCAACACATTAGAAGCTTATCAAGTCCAAATGGTCCTCATGCTTCTCCATATAATCATCCCAATCAGTCACCAAAACCTGACAGGAGATAA 1470 44.08 MGLAPNDSKVETWIEGKSRTASEKKKKKENELEEETGCWVKLKFIGSCIPSRSKVDSSLSGSKVDSFISGTSTHCDSKSKLDEKRDILATALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRLKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPPMSEVVEILKPLPNLKDMASSSYYFQTMQADRARSTPNAKSVVRTQSMFVARNGQHIRSLSSPNGPHASPYNHPNQSPKPDRR* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30024348 30029777 + CsaV3_5G037900.1 Csa05g02971 531358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02971 489 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g02971 489 MobiDBLite consensus disorder prediction 459 482 - -
Csa05g02971 489 PANTHER OS01G0588500 PROTEIN-RELATED 66 481 - -
Csa05g02971 489 SUPERFAMILY Protein kinase-like (PK-like) 112 415 IPR011009 -
Csa05g02971 489 Gene3D Phosphorylase Kinase; domain 1 110 220 - -
Csa05g02971 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Csa05g02971 489 Gene3D Transferase(Phosphotransferase) domain 1 221 438 - -
Csa05g02971 489 CDD STKc_IRAK 141 418 - -
Csa05g02971 489 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 66 481 - -
Csa05g02971 489 MobiDBLite consensus disorder prediction 459 489 - -
Csa05g02971 489 MobiDBLite consensus disorder prediction 12 34 - -
Csa05g02971 489 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524
Csa05g02971 489 Pfam Protein tyrosine and serine/threonine kinase 139 415 IPR001245 GO:0004672|GO:0006468
Csa05g02971 489 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02971 Csa-Chr5:30024348 Csa06g01482 Csa-Chr6:12563836 9.77E-164 dispersed
Csa06g02274 Csa-Chr6:20381636 Csa05g02971 Csa-Chr5:30024348 1.27E-115 dispersed
Csa01g01768 Csa-Chr1:14453580 Csa05g02971 Csa-Chr5:30024348 1.18E-180 transposed
Csa02g00212 Csa-Chr2:1468123 Csa05g02971 Csa-Chr5:30024348 4.41E-180 transposed
Csa05g02420 Csa-Chr5:26216079 Csa05g02971 Csa-Chr5:30024348 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78292 PF07714 PK_Tyr_Ser-Thr 6.50E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02971 - - csv:101211851 965.296