Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02973 ATGGCTTCTCCTCATCACCATTCCCATAGTTTCATGTTCCAATCCCGTCCCGCCCCCGATCACCACGAATACATCCCATCCGCTTCCTTCAACACCATCCCTTCCTGCCCTCCTCACCTCTACTTTCACGATGGGGTTGTTCCGGTGATGATGAAGAGATCGATGTCATTTTCAGAAGTTGAGAATGGGTGCGAGGATGTGAACGGCGATGAAGGGTTGTCAGACGACGGATTGGCGTTGGGAGAGAAGAAGAAGAGACTGAATTTAGAGCAAGTGAAAGCATTGGAGAAGAGCTTTGAGGTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAATTAGCCAAAGCATTGGGGTTGCAACCAAGACAAATTGCTATTTGGTTTCAGAATAGAAGAGCCAGATGGAAAACTAAGCAATTGGAAAGAGATTATGAGGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGTTATTAGCATTGAAAACCAAAGACTCCGGCGAGACAGCGGGGGGCGGCGGTGCCACCATGAACTTAAAGAAAGAAAACGAACGTTGTTGGAGCAGCGATAACAGTTGTGACATCAACCTCGACATCTCGAACACACAAACACCAATAGGTGGCAGTGGCGGAAGAGGATGTTCTCAACCAGGAATGATCAAAGATCTTTTCCCCTCTGCGGCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAACATGGGTCATCCCGATCAACGGTGGATCAGCATCCTCAAGTGATTCAAGAAGAGAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAGCAAACTGCAGCAGCAGCTGGGTTCTGGCCATGGAGTACTTCGGATCAAAATTCTCATTTTCATTGA 918 46.95 MASPHHHSHSFMFQSRPAPDHHEYIPSASFNTIPSCPPHLYFHDGVVPVMMKRSMSFSEVENGCEDVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGETAGGGGATMNLKKENERCWSSDNSCDINLDISNTQTPIGGSGGRGCSQPGMIKDLFPSAAFRSAAITQLLQHGSSRSTVDQHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSTSDQNSHFH* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30044255 30048048 - CsaV3_5G037920.1 Csa05g02973 531360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02973 305 SUPERFAMILY Homeodomain-like 81 140 IPR009057 -
Csa05g02973 305 Pfam Homeobox associated leucine zipper 138 178 IPR003106 GO:0006355|GO:0043565
Csa05g02973 305 SMART HOX_1 81 142 IPR001356 GO:0003677
Csa05g02973 305 Coils Coil 130 171 - -
Csa05g02973 305 Gene3D - 79 146 - -
Csa05g02973 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 2 305 - -
Csa05g02973 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 305 IPR045224 GO:0003700
Csa05g02973 305 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Csa05g02973 305 ProSiteProfiles 'Homeobox' domain profile. 82 138 IPR001356 GO:0003677
Csa05g02973 305 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Csa05g02973 305 CDD homeodomain 83 139 IPR001356 GO:0003677
Csa05g02973 305 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Csa05g02973 305 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02973 Csa-Chr5:30044255 Csa06g03138 Csa-Chr6:26787699 1.22E-39 dispersed
Csa01g00793 Csa-Chr1:5021575 Csa05g02973 Csa-Chr5:30044255 2.75E-38 wgd
Csa05g02432 Csa-Chr5:26297535 Csa05g02973 Csa-Chr5:30044255 8.31E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31869 PF00046 Homeodomain 2.30E-15 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02973 K09338 - csv:101212093 622.468