Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02977 ATGGCGGAACCGGTTACAGAGCCTAAGGCATTACCCGAGCCCGAAAAGAAGAAAGAACAGAGCCTTCCCTTTCACCAACTCTTCTCTTTTGCAGACAAATACGACTGGTTTCTCATGATCCTTGGTAGTTTTGGTGCCATTATCCACGGCTCTTCCATGCCCGTTTTCTTCCTCCTTTTCGGCGAAATGGTTAACGGATTCGGCAAAAACCAATCCAATTTTCACAAAATGACAGCTGAAGTCTCTAAGTATGCTCTGTATTTTGTGTACTTGGGTCTCATTGTCTGTTTCTCATCCTATGCCGAGATCGCATGTTGGATGTACACAGGGGAAAGACAAGTGAGCACATTGAGAAAAAAGTATTTAGAAGCTGTTTTGAAACAAGATGTTGGATTCTTCGACACTGATGCAAGAACAGGGGATGTTGTTTTTAGTGTTTCAACAGACACTCTTCTTGTACAAGATGCAATCAGTGAGAAGGTGGGGAACTTCATTCACTATCTTTCGACTTTCTTGGCTGGATTGGTTGTGGGTTTTGTGTCAGCATGGAGATTAGCTCTTTTGAGTATAGCAGTAATTCCTGGAATAGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGCCTTACTTCAAAGAGTCGAGAATCCTATGCAAATGCTGGCATCATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGGGAAAGCAAAGCTTTGAATTCCTATTCAGATTCAATTCAAAACACTTTGAAAATCGGATACAAAGCAGGAATGGCTAAAGGGTTGGGTCTTGGTTGCACTTATGGCATTGCTTGTATGTCTTGGGCACTTGTTTTCTGGTATGCTGGCGTTTTCATCCGAAACGGACAAACAGACGGTGGTAAAGCCTTCACTGCTATATTCTCCGCCATCGTCGGTGGCATGAGTTTGGGGCAGTCATTTTCCAATTTGGGAGCATTTAGTAAAGGGAAAGCAGCAGGGTATAAATTGATGGAGATTATCAAACAAAAGCCTACAATAATTCAAGACCCATTAGATGGGAAATGTTTGGGTGAAGTTAATGGCAACATTGAGTTCAAAGATGTAACCTTTAGCTACCCATCTAGACCGGATGTGATGATCTTTAGAGATTTCTCCATTTTCTTCCCGGCCGGTAAAACGGTGGCTGTTGTTGGCGGTAGCGGTTCCGGGAAAAGCACTGTTGTTTCTCTCATTGAAAGATTCTATGATCCCAATCAAGGGCAGGTTTTATTAGATAATGTAGACATCAAGACACTGCAATTGAAATGGCTACGTGATCAAATTGGTTTAGTGAATCAAGAACCGGCTTTGTTTGCAACCACCATATACGAAAACATTCTCTACGGCAAGCCCGACGCCACCACGGCGGAGGTTGAAGCTGCCGCGGCTGCAGCCAATGCACATAGCTTTATCACATTGCTCCCCAATGGCTACGATACCCAAGTGGGGGAAAGAGGATTACAACTCTCCGGTGGCCAAAAACAGAGAATCGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTTCTCGATGAAGCCACTAGTGCTCTCGATGCAGGCTCTGAGAGCATAGTTCAAGAAGCTTTAGATCGTTTAATGGTTGGAAGAACTACGGTGGTAGTCGCACATCGATTATCAACCATAAGAAATGTCGATTCAATTGCAGTTATACAACAGGGGCAAGTCGTCGAAACAGGAACTCACGACGAACTAATCACTAAATCCGGTGCTTATTCTTCGTTAATCCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCCAATCCATCGACACGTCGAACACGATCGTCACGGCTTAGCCACTCATTATCAACAAAATCATTAAGCCTCCGCTCCGGTAGTCTCAGGAATTTGAGCTATTCGTATAGCACCGGTGCTGATGGCCGAATCGAAATGGTCTCGAACGCCGAAACCGATCGGAAAAACCCTGCCCCAGATGGCTATTTCCTTCGTCTTCTTAAACTCAACGGCCCTGAATGGCCGTATTCAATAATGGGAGCTGTTGGGTCTGTTCTCTCCGGTTTCATCAGTCCAACATTCGCCATTGTTATGAGCAACATGATTGAGGTTTTCTATTACAGAAATTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTTTTCATCTACATCGGGATTGGGGTTTACGCAGTTGTAGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGCGAAAATCTCACAACCAGAGTCAGAAGAATGATGCTCGCAGCTATATTGAGGAATGAAGTCGGATGGTTCGATGAAGAAGAACACAACTCAAGTTTAGTAGCAGCAAGATTAGCGACTGATGCAGCTGATGTAAAATCCGCGATAGCTGAAAGAATATCAGTGATATTACAAAACATGACTTCACTTTTCACATCTTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTTCTCATCCTTGCAGCTTTCCCTCTACTTGTTCTTGCCAACATGGCTCAGCAACTTTCATTAAAAGGATTTGCTGGGGATACTGCAAAGGCCCACGCGAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTAGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTTTGTTTTGCCATGAGCTTCGTATCCCACAGCGACAGAGTCTCCGTCGAAGCCAAACGGCAGGGATTCTTTTTGGTATATCGCAGCTAGCTCTTTATGCTTCTGAAGCTTTAGTGTTGTGGTATGGTGTCCATTTGGTCAGCAATGGTGGATCAACATTTTCTAAGGTGATCAAAGTCTTCGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCGGAAACTGTTAGTCTTGCTCCCGAGATTGTTAGAGGTGGTGAATCGATCGGTTCTGTTTTCTCGATTCTCGATCGCCCAACGAGGATTGACCCTGATGATCCTGAGGCAGAGACTGTTGAGACGCTTCGTGGAGAAATTGAACTACGGCATGTTGACTTCGCATACCCGTCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATTTGAGAATCAGAGCTGGTCAGAGCCAGGCATTGGTTGGAGCTAGTGGATCAGGGAAGAGTTCAGTGATTGCTTTGATTGAGAGATTCTACGATCCGCTTACCGGGAAAGTTATGATTGACGGGAAGGACATTCGACGCCTAAACTTACAATCCTTGAGGCTGAAAATTGGATTAGTACAACAAGAGCCAGCCTTATTTGCTGCCAGCATTTTTGATAACATTGCATATGGAAAAGATGGAGCAACAGAATCAGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTTCATGGCTTTGTAAGTGGACTACCTGATGGCTACAACACACCAGTTGGAGAAAGGGGAGTTCAGCTATCTGGTGGCCAAAAACAACGCATAGCTATTGCTAGGGCTGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAGGCCACCAGCGCCCTCGACGCCGAGTCCGAGTGTGTGCTGCAAGAGGCTCTCGAAAGGCTCATGAGGGGCCGAACCACGGTGGTTGTAGCACATCGCTTATCCACAATCAGGAGTGTGGACAGCATTGGTGTGGTCCAAGATGGGCGCATTGTTGAACAAGGTAGCCATAACGAGCTGCTAAGCCGAGCCGAGGGGGCTTACTCAAGGCTTTTGCAGCTGCAACATCAACATATATGA 3753 45.0 MAEPVTEPKALPEPEKKKEQSLPFHQLFSFADKYDWFLMILGSFGAIIHGSSMPVFFLLFGEMVNGFGKNQSNFHKMTAEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIIQDPLDGKCLGEVNGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAAAANAHSFITLLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHDELITKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFCHELRIPQRQSLRRSQTAGILFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIVRGGESIGSVFSILDRPTRIDPDDPEAETVETLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPLTGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATESEVIEAARAANVHGFVSGLPDGYNTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRSVDSIGVVQDGRIVEQGSHNELLSRAEGAYSRLLQLQHQHI* 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30108267 30115095 - CsaV3_5G037960.1 Csa05g02977 531364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02977 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Csa05g02977 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Csa05g02977 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa05g02977 1250 SUPERFAMILY ABC transporter transmembrane region 673 993 IPR036640 GO:0005524|GO:0016021
Csa05g02977 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Csa05g02977 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa05g02977 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Csa05g02977 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Csa05g02977 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Csa05g02977 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524
Csa05g02977 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Csa05g02977 1250 Gene3D ABC transporter type 1, transmembrane domain 86 982 IPR036640 GO:0005524|GO:0016021
Csa05g02977 1250 Pfam ABC transporter transmembrane region 39 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa05g02977 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa05g02977 1250 Gene3D - 361 624 IPR027417 -
Csa05g02977 1250 SMART AAA_5 390 582 IPR003593 -
Csa05g02977 1250 SMART AAA_5 1035 1207 IPR003593 -
Csa05g02977 1250 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1248 - -
Csa05g02977 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Csa05g02977 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Csa05g02977 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1248 IPR039421 -
Csa05g02977 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
Csa05g02977 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Csa05g02977 1250 Gene3D - 998 1250 IPR027417 -
Csa05g02977 1250 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02748 Csa-Chr2:23931154 Csa05g02977 Csa-Chr5:30108267 3.95E-13 dispersed
Csa02g02749 Csa-Chr2:23934159 Csa05g02977 Csa-Chr5:30108267 1.03E-87 dispersed
Csa03g03293 Csa-Chr3:30032241 Csa05g02977 Csa-Chr5:30108267 0 dispersed
Csa05g01807 Csa-Chr5:21374283 Csa05g02977 Csa-Chr5:30108267 6.31E-88 dispersed
Csa01g00613 Csa-Chr1:3910631 Csa05g02977 Csa-Chr5:30108267 6.37E-100 transposed
Csa01g02860 Csa-Chr1:25154173 Csa05g02977 Csa-Chr5:30108267 0 transposed
Csa03g02311 Csa-Chr3:20609983 Csa05g02977 Csa-Chr5:30108267 0 transposed
Csa03g04292 Csa-Chr3:37581797 Csa05g02977 Csa-Chr5:30108267 0 transposed
Csa03g04589 Csa-Chr3:39949790 Csa05g02977 Csa-Chr5:30108267 0 transposed
Csa05g02153 Csa-Chr5:24591368 Csa05g02977 Csa-Chr5:30108267 0 transposed
Csa05g02946 Csa-Chr5:29789176 Csa05g02977 Csa-Chr5:30108267 7.80E-120 transposed
Csa06g03746 Csa-Chr6:29869786 Csa05g02977 Csa-Chr5:30108267 0 transposed
Csa07g02331 Csa-Chr7:21600158 Csa05g02977 Csa-Chr5:30108267 1.71E-12 transposed
Csa01g00785 Csa-Chr1:4959845 Csa05g02977 Csa-Chr5:30108267 6.63E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02977 K05658 - csv:101212585 2311.57