Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g02983 | ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACCCTGACTCCGATACTCCGACTAAGATCCCACCGTCTTTCACCAACGGCGTTCTCAAGCGCCACCACCACAATCACCATCACCACCATCGCCCACCCTCCTCCACGGTTGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCGCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGCTGTCACCGCAATTTCCACCGCCGCGATCCTGAAGATCCAATTTCAACTTTAGCTATCAATACAGCCCCAACTCATGTTATTGAGTATCAACCTCACCACCGTCACCACCCACCCCCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCCGCATCTCCTCCCCCAATCTCGTCTTCCTATTACCCATCTGCGCCACATATGTTATTAGCGCTTTCCGCTGGCTTGTCGGGTCGTCCTCCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGTAACGAACAGAAGGAGAAAATGCTGGATTTCGCCGAACGGGTGGGATGGAAAATGCAGAAACGAGATGAAGATTTGGTTCGAGATTTTTGTAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCTGATTCCAATGGCGACGCAACCGCCACCGCCATTGCCACCGTCGCCGCCGCCATCGCCACCGTCAACAATCATGAAGATGAACCAGATGGAGGCTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCTTCTTGA | 924 | 50.87 | MDLAPAPITTSSNNTKSPDPDSDTPTKIPPSFTNGVLKRHHHNHHHHHRPPSSTVVVSYKECLKNHAATLGAHALDGCGEFMPSPSATPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGDATATAIATVAAAIATVNNHEDEPDGGLHMHIGSNGSSSSS* | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30174070 | 30176768 | - | CsaV3_5G038020.1 | Csa05g02983 | 531370 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g02983 | 307 | MobiDBLite | consensus disorder prediction | 174 | 201 | - | - | |
Csa05g02983 | 307 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 59 | 110 | IPR006456 | - | |
Csa05g02983 | 307 | MobiDBLite | consensus disorder prediction | 37 | 51 | - | - | |
Csa05g02983 | 307 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 59 | 110 | IPR006456 | - | |
Csa05g02983 | 307 | Gene3D | - | 184 | 260 | - | - | |
Csa05g02983 | 307 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 13 | 274 | - | - | |
Csa05g02983 | 307 | MobiDBLite | consensus disorder prediction | 286 | 307 | - | - | |
Csa05g02983 | 307 | Pfam | ZF-HD protein dimerisation region | 57 | 111 | IPR006456 | - | |
Csa05g02983 | 307 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Csa05g02983 | 307 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Csa05g02983 | 307 | MobiDBLite | consensus disorder prediction | 131 | 160 | - | - | |
Csa05g02983 | 307 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 13 | 274 | - | - | |
Csa05g02983 | 307 | MobiDBLite | consensus disorder prediction | 179 | 201 | - | - | |
Csa05g02983 | 307 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 199 | 256 | IPR006455 | - | |
Csa05g02983 | 307 | SUPERFAMILY | Homeodomain-like | 186 | 260 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g02983 | Csa-Chr5:30174070 | Csa06g03243 | Csa-Chr6:27375407 | 3.00E-45 | dispersed | |
Csa03g03844 | Csa-Chr3:33868099 | Csa05g02983 | Csa-Chr5:30174070 | 1.43E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31873 | PF04770 | ZF-HD_dimer | 5.00E-28 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g02983 | - | - | csv:101213548 | 552.747 |