Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02983 ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACCCTGACTCCGATACTCCGACTAAGATCCCACCGTCTTTCACCAACGGCGTTCTCAAGCGCCACCACCACAATCACCATCACCACCATCGCCCACCCTCCTCCACGGTTGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCGCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGCTGTCACCGCAATTTCCACCGCCGCGATCCTGAAGATCCAATTTCAACTTTAGCTATCAATACAGCCCCAACTCATGTTATTGAGTATCAACCTCACCACCGTCACCACCCACCCCCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCCGCATCTCCTCCCCCAATCTCGTCTTCCTATTACCCATCTGCGCCACATATGTTATTAGCGCTTTCCGCTGGCTTGTCGGGTCGTCCTCCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGTAACGAACAGAAGGAGAAAATGCTGGATTTCGCCGAACGGGTGGGATGGAAAATGCAGAAACGAGATGAAGATTTGGTTCGAGATTTTTGTAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCTGATTCCAATGGCGACGCAACCGCCACCGCCATTGCCACCGTCGCCGCCGCCATCGCCACCGTCAACAATCATGAAGATGAACCAGATGGAGGCTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 924 50.87 MDLAPAPITTSSNNTKSPDPDSDTPTKIPPSFTNGVLKRHHHNHHHHHRPPSSTVVVSYKECLKNHAATLGAHALDGCGEFMPSPSATPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGDATATAIATVAAAIATVNNHEDEPDGGLHMHIGSNGSSSSS* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30174070 30176768 - CsaV3_5G038020.1 Csa05g02983 531370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02983 307 MobiDBLite consensus disorder prediction 174 201 - -
Csa05g02983 307 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Csa05g02983 307 MobiDBLite consensus disorder prediction 37 51 - -
Csa05g02983 307 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Csa05g02983 307 Gene3D - 184 260 - -
Csa05g02983 307 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 13 274 - -
Csa05g02983 307 MobiDBLite consensus disorder prediction 286 307 - -
Csa05g02983 307 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Csa05g02983 307 MobiDBLite consensus disorder prediction 1 31 - -
Csa05g02983 307 MobiDBLite consensus disorder prediction 1 53 - -
Csa05g02983 307 MobiDBLite consensus disorder prediction 131 160 - -
Csa05g02983 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 274 - -
Csa05g02983 307 MobiDBLite consensus disorder prediction 179 201 - -
Csa05g02983 307 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 256 IPR006455 -
Csa05g02983 307 SUPERFAMILY Homeodomain-like 186 260 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02983 Csa-Chr5:30174070 Csa06g03243 Csa-Chr6:27375407 3.00E-45 dispersed
Csa03g03844 Csa-Chr3:33868099 Csa05g02983 Csa-Chr5:30174070 1.43E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31873 PF04770 ZF-HD_dimer 5.00E-28 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02983 - - csv:101213548 552.747