Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02983 ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACCCTGACTCCGATACTCCGACTAAGATCCCACCGTCTTTCACCAACGGCGTTCTCAAGCGCCACCACCACAATCACCATCACCACCATCGCCCACCCTCCTCCACGGTTGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCGCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGCTGTCACCGCAATTTCCACCGCCGCGATCCTGAAGATCCAATTTCAACTTTAGCTATCAATACAGCCCCAACTCATGTTATTGAGTATCAACCTCACCACCGTCACCACCCACCCCCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCCGCATCTCCTCCCCCAATCTCGTCTTCCTATTACCCATCTGCGCCACATATGTTATTAGCGCTTTCCGCTGGCTTGTCGGGTCGTCCTCCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGTAACGAACAGAAGGAGAAAATGCTGGATTTCGCCGAACGGGTGGGATGGAAAATGCAGAAACGAGATGAAGATTTGGTTCGAGATTTTTGTAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCTGATTCCAATGGCGACGCAACCGCCACCGCCATTGCCACCGTCGCCGCCGCCATCGCCACCGTCAACAATCATGAAGATGAACCAGATGGAGGCTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 924 50.87 MDLAPAPITTSSNNTKSPDPDSDTPTKIPPSFTNGVLKRHHHNHHHHHRPPSSTVVVSYKECLKNHAATLGAHALDGCGEFMPSPSATPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGDATATAIATVAAAIATVNNHEDEPDGGLHMHIGSNGSSSSS* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30174070 30176768 - CsaV3_5G038020.1 Csa05g02983 531370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02983 307 MobiDBLite consensus disorder prediction 174 201 - -
Csa05g02983 307 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Csa05g02983 307 MobiDBLite consensus disorder prediction 37 51 - -
Csa05g02983 307 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Csa05g02983 307 Gene3D - 184 260 - -
Csa05g02983 307 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 13 274 - -
Csa05g02983 307 MobiDBLite consensus disorder prediction 286 307 - -
Csa05g02983 307 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Csa05g02983 307 MobiDBLite consensus disorder prediction 1 31 - -
Csa05g02983 307 MobiDBLite consensus disorder prediction 1 53 - -
Csa05g02983 307 MobiDBLite consensus disorder prediction 131 160 - -
Csa05g02983 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 274 - -
Csa05g02983 307 MobiDBLite consensus disorder prediction 179 201 - -
Csa05g02983 307 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 256 IPR006455 -
Csa05g02983 307 SUPERFAMILY Homeodomain-like 186 260 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02983 - - - csv:101213548 552.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02983 Csa-Chr5:30174070 Csa06g03243 Csa-Chr6:27375407 3.00E-45 dispersed
Csa03g03844 Csa-Chr3:33868099 Csa05g02983 Csa-Chr5:30174070 1.43E-92 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g03128 . 37 231 ZF-HD Transcription Factor Family AT4G24660 51.3 1.0e-46 183.7
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT2G02540 52.8 5.4e-51 198.4
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT1G14440 54.1 9.9e-53 204.1
Csa03g03844 . 12 299 ZF-HD Transcription Factor Family AT5G15210 52.7 5.2e-50 194.9
Csa05g02983 . 6 255 ZF-HD Transcription Factor Family AT5G15210 52.0 4.9e-48 188.3
Csa03g03844 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.7 1.3e-60 230.3
Csa05g02983 . 16 257 ZF-HD Transcription Factor Family AT3G28920 62.5 1.7e-57 219.9
Csa03g03844 . 30 263 ZF-HD Transcription Factor Family AT5G39760 64.9 3.2e-49 192.6
Csa05g02983 . 24 261 ZF-HD Transcription Factor Family AT5G39760 57.3 4.2e-49 192.2
Csa05g02983 . 57 258 ZF-HD Transcription Factor Family AT1G69600 51.5 2.8e-47 185.7
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT2G02540 52.8 5.4e-51 198.4
Csa06g03128 . 37 231 ZF-HD Transcription Factor Family AT4G24660 51.3 1.0e-46 183.7
Csa03g03844 . 30 263 ZF-HD Transcription Factor Family AT5G39760 64.9 3.2e-49 192.6
Csa05g02983 . 24 261 ZF-HD Transcription Factor Family AT5G39760 57.3 4.2e-49 192.2
Csa05g02983 . 57 258 ZF-HD Transcription Factor Family AT1G69600 51.5 2.8e-47 185.7
Csa03g03844 . 12 299 ZF-HD Transcription Factor Family AT5G15210 52.7 5.2e-50 194.9
Csa05g02983 . 6 255 ZF-HD Transcription Factor Family AT5G15210 52.0 4.9e-48 188.3
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT1G14440 54.1 9.9e-53 204.1
Csa03g03844 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.7 1.3e-60 230.3
Csa05g02983 . 16 257 ZF-HD Transcription Factor Family AT3G28920 62.5 1.7e-57 219.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31873 PF04770 ZF-HD_dimer 5.00E-28 No_clan Csa TF