Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g02995 ATGGCAATCATAACAACAGTCCTCCAATTGCTTCTTTTTTTCCCAATCTTCTCCTCTGTTAATGGAGATTATGGAGGTTGGATCAGCGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGCGGCGCTTGTGGGTATGGGAATTTGTACAGCCAAGGCTATGGGACGAACACTGCAGCGTTGAGCACGGCGCTTTTCGATAATGGACTCAGTTGTGGCGCTTGTTTTGAGCTACGCTGTGTCAATGACCCTCAGTGGTGTCTTCCTGGCACCATTGTTGTCACTGCCACTAATTTCTGTCCTCCTGGTGGCTGCTGTGACCCTCCTAATCATCATTTTGACCTCTCTCAGCCTATCTTTCAACACATTGCTCAATATCGCGCTGGGATTATCCCTGTCGCTTACCGCAGGGTAAGGTGTAGGAGAAGTGGAGGAATAAGATTCACAATCAACGGGCATTCATATTTCAACTTAGTACTAATCACAAACGTGGGGGGAGCCGGGGATATTCATTCGGTGGCGATTAAGGGTTCGAAAACAAGATGGCAACCGATGTCTAGAAATTGGGGCCAAAACTGGCAGTCCAATTCTTATCTGAACGGACAAAGCCTCTCATTTTTGGTCACCGCCAGCGACGGCCGGAAAGTCCTCTCCTACAACGTAGCTCCCTCCGGTTGGTCCTTTGGCCAAACTTATGTCGGCGGCCAATTTCGTTATTAA 732 48.5 MAIITTVLQLLLFFPIFSSVNGDYGGWISAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGCCDPPNHHFDLSQPIFQHIAQYRAGIIPVAYRRVRCRRSGGIRFTINGHSYFNLVLITNVGGAGDIHSVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRKVLSYNVAPSGWSFGQTYVGGQFRY* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30259871 30261660 - CsaV3_5G038140.1 Csa05g02995 531382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g02995 243 PANTHER EXPANSIN-A5 10 242 - -
Csa05g02995 243 SMART dpbb_1 62 139 IPR007112 -
Csa05g02995 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Csa05g02995 243 Gene3D - 15 145 IPR036908 -
Csa05g02995 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Csa05g02995 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Csa05g02995 243 Gene3D - 149 241 IPR036749 -
Csa05g02995 243 SUPERFAMILY Barwin-like endoglucanases 10 167 IPR036908 -
Csa05g02995 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Csa05g02995 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Csa05g02995 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Csa05g02995 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Csa05g02995 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Csa05g02995 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Csa05g02995 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Csa05g02995 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Csa05g02995 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Csa05g02995 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Csa05g02995 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Csa05g02995 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Csa05g02995 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Csa05g02995 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Csa05g02995 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Csa05g02995 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Csa05g02995 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Csa05g02995 243 PANTHER EXPANSIN-A15 10 242 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02995 Csa-Chr5:30259871 Csa06g00228 Csa-Chr6:1563531 7.34E-126 dispersed
Csa01g00561 Csa-Chr1:3628264 Csa05g02995 Csa-Chr5:30259871 1.14E-106 wgd
Csa01g00242 Csa-Chr1:1529037 Csa05g02995 Csa-Chr5:30259871 1.45E-131 wgd
Csa05g02468 Csa-Chr5:26468526 Csa05g02995 Csa-Chr5:30259871 4.71E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g02995 K20628 - csv:101220358 514.612