Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03014 ATGGCTAAGAAGGACGATTCTGCAACAAGACCTCCACTTCAACGCCCCACTATTACTCTCCCGCCTCGTCCTTCTATGGAGGCTTTTTTCACCGGCGGTCCTACTGGGGTTAGCCCTGGTCCTATGACTCTTCTTTCAAGTTACTTCGCCGACGGTGCCGTTGACTCTCCTTCCTTCTCCCAGCTTCTCGCTGGAGCTATGGCTTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCTACTCCCAATTATTACGCCAAGGATGGACCCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGGTGAATTTAGTGGTAGCTCGTTCTCCTCTGTTCTCGGTTCCTCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCGGGGTTTTATCCTCCTCAGAGTCCATTTGGAATGTCGCATCAGCAGGCATTGGCTCAAGTTACTGCTCAAGCAGCATTGGCAAATTCCCATATGCATATGCAGCAAGCTGAATACCAACATTCTTCAGTACCAGCTCCTACAGAACCGCTAGTGCGTGATCCATCATTTTCTCTCGATGATGCATCTCAACTGGCCATAATACCCTCCACATCAGACACAAAAAGTCTGATTGCAGAATCGACAGAAGTTTCTCATTCTGATAGAAAATATCAACCTCCTCCTCCCCCCCATGGCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATATGGGCAGAAGTTGGTTAAGGGCAGTGAATTTCCACGAAGCTATTACAAATGCACTCATTTGAATTGTCCCGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGCCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATATTGAGCCGGCTGGATGTACAAATTCATTGATTAAGCCTGAATGTGGCTTGCAAAACCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGGACGAGCTGATACAGAGATAACGGATGACAGAGATGAAGATGAGCCAAATCCAAAGCGGCAGAACATTGACGCAGGGACATCTGGAGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTCCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAATGTCCGAAAGCATGTTGAGAGGTCTTCAACAGACTCGAAAGCTGTTGTAACTACGTACGAAGGGAAACATAACCATGATGTTCCTGCAGCCAGAAACAGCAGCCACCACACTGTCAACAACACTGTCCACCATATCAAACCACTCAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTTGGAACTAATGACCAGAGACCTGCCGTTTTGCAGCTTAAAGAAGAACAAATCACTGTGTAA 1521 45.96 MAKKDDSATRPPLQRPTITLPPRPSMEAFFTGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGPASELEFGMKQSKPVNLVVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLVRDPSFSLDDASQLAIIPSTSDTKSLIAESTEVSHSDRKYQPPPPPHGSDKPADDGYNWRKYGQKLVKGSEFPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNIEPAGCTNSLIKPECGLQNQAGILNKSSENVQLGSSDSEGRADTEITDDRDEDEPNPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVHHIKPLKVVAQKHPLLKEMEFGTNDQRPAVLQLKEEQITV* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30396040 30400995 - CsaV3_5G038330.1 Csa05g03014 531401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03014 506 MobiDBLite consensus disorder prediction 198 237 - -
Csa05g03014 506 SUPERFAMILY WRKY DNA-binding domain 384 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa05g03014 506 MobiDBLite consensus disorder prediction 283 305 - -
Csa05g03014 506 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g03014 506 SMART WRKY_cls 392 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g03014 506 PANTHER WRKY PROTEIN 10 505 - -
Csa05g03014 506 MobiDBLite consensus disorder prediction 1 33 - -
Csa05g03014 506 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 505 IPR044810 GO:0003700
Csa05g03014 506 MobiDBLite consensus disorder prediction 341 359 - -
Csa05g03014 506 Pfam WRKY DNA -binding domain 393 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g03014 506 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g03014 506 SUPERFAMILY WRKY DNA-binding domain 230 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa05g03014 506 ProSiteProfiles WRKY domain profile. 227 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g03014 506 MobiDBLite consensus disorder prediction 328 371 - -
Csa05g03014 506 ProSiteProfiles WRKY domain profile. 387 452 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa05g03014 506 Gene3D WRKY domain 226 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa05g03014 506 Gene3D WRKY domain 377 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00472 Csa-Chr1:2993098 Csa05g03014 Csa-Chr5:30396040 9.99E-86 transposed
Csa01g01888 Csa-Chr1:15852778 Csa05g03014 Csa-Chr5:30396040 2.57E-15 transposed
Csa01g03336 Csa-Chr1:29902748 Csa05g03014 Csa-Chr5:30396040 1.32E-15 transposed
Csa03g00384 Csa-Chr3:3226389 Csa05g03014 Csa-Chr5:30396040 2.18E-78 transposed
Csa03g00441 Csa-Chr3:3723776 Csa05g03014 Csa-Chr5:30396040 7.24E-18 transposed
Csa03g03028 Csa-Chr3:28698684 Csa05g03014 Csa-Chr5:30396040 6.74E-81 transposed
Csa03g03237 Csa-Chr3:29704664 Csa05g03014 Csa-Chr5:30396040 6.45E-15 transposed
Csa06g01599 Csa-Chr6:13759828 Csa05g03014 Csa-Chr5:30396040 2.41E-73 transposed
Csa07g00267 Csa-Chr7:2056294 Csa05g03014 Csa-Chr5:30396040 2.26E-13 transposed
Csa05g02490 Csa-Chr5:26596980 Csa05g03014 Csa-Chr5:30396040 7.27E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31877 PF03106 WRKY 3.20E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03014 - - csv:101223114 1019.99