Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03020 ATGCCTTCTTCCATGTGGAGCGAGCTTTGTCTGAGGCCATCACCGCCTCCTCTCAATGTCGCCGCCGACGCAACCCCAGTCTTGGAATGCTACGCCTGTACCCAAGTGGGCGTTCCAGCCTTCCACTCCACCAGCTGCGACCACGCCCACCAACAACCCGAATGGGAAGCCTCCGCGGGCTCTTCCCTGGTTCCAATCCAACCCACAAAATCCTCACCAGCGCCCCGACATTCTTCGGCGGGTTGCTTCGGGACGGTTCTGGACCCAAGAAAGAAACCGGTTCAGAGATGGAACCGGGTTCTGTTATTGGCCCGGGGAATGTCTCTTGCGGTTGATCCGCTTTACTTCTATGCTCTGTCTATTGGAAGAGGAGGATGGCCTTGCCTGTACATGGATGGTGGGTTGGCTGCCGGAGTTACGGTGGTTCGAACGTGTCTTGATATAGTGCACTTGTGGCACGTGTGGCTTCAGTTCAGGCTTGCTTACGTGTCGAAAGAGAGTATGGTGATTGGGTGTGGGAAACTGGTGTGGGATGCACGTGATATTGCTTCTCACTATGTTCGTTCTTTCAAAGGCTTTTGGTTTGATGCCTTTGTTATCCTCCCTGTTCCTCAGATTGTTTATTGGTTGGTTTTACCAAAACTGATCAGAGAAGAAAGAATCAAACTTATAATGACAGTAATCTTATTAATGTTCTTGTTCCAATTCCTCCCAAAAGTTTACCACTCCATTATTTTAATGAGAAGAATGCAGAAGGTTACTGGATACATCTTTGGCACCATTTGGTGGGGTTTTGGCCTCAATCTCATTGCCTATTTTATTGCCTCTCATGTTGCTGGGGGTTGTTGGTATGTTCTTGCAATACAGCGAGTTGCTTCTTGTATCCAACAACATTGTGAGAGAAACAAGTGCAACTTATCTTTGTCTTGCTCTGAGGAGGTGTGTTATCAGTTTCTATCATCAGATACAACGATTGGAAGTTCGTGTGGTCGGAATTCGACTGCTACGTTTAGGAAGCCACTATGTTTGGATGTTAATGGTCCGTTCGCCTATGGCATCTACAAGTGGGCTCTTCCTGTCATTTCTAGCAATTCAGTTGCTGTCAAAATCCTTTATCCTATCTTTTGGGGATTAATGACTCTCAGCACCTTTGGAAATGATCTTGAGCCTACGAGTAATTGGCTGGAAGTGTGCTTCAGTATTTGTACGGTGCTTAGTGGATTGTTGCTTTTCACTCTTTTGATTGGTAATATTCAGGTACTTTTGCACGCTGTCATGGCAAGGAGGCGAAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGGAGACGACAATTGCCATCTCGTTTGAAACATCGAGTTCGACACTATGAGCACCAGAGATGGGCAGCTATGGGAGGAGAAGATGAGATGGAACTAATCAATGATTTGCCAGAAGGTCTTAGAAGAGATATCAAACGTCATCTTTGTGTTGACCTAATCAGAAAGGTGCCTCTCTTTCAAAACCTGGAGGAGCTGATTCTAGACAACATATGTGACAAAGTCAAGCCACTTGTATTCTCCAAAGATGAAAAGATAATCAGAGAAGGAGATCCTGTTCCAAGGATGTTATTCATAGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTGAGCAAGGGCATGACAGCGACAAGTTTTATTGAACCGGGAGGATTTCTTGGTGACGAACTGCTATCGTGGTGTCTTCGTCGCCCATTTCTGGAGAGACTTCCAGCTTCATCCGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGCTACAAATTCGCGAATGAGAGACTGAAGAGAACAGCAAGATTTTACTCTTCCAACTGGAGAACATGGGCTGCTGTTAACATACAACTTGCTTGGCGTCGATACAGAAAACGGATGAGGCGTCCAGTGATAGCTGTGGTGGAAAATGGAAGCACTGAACGTCGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGACCACATGATCATCTTGAATAG 2067 46.11 MPSSMWSELCLRPSPPPLNVAADATPVLECYACTQVGVPAFHSTSCDHAHQQPEWEASAGSSLVPIQPTKSSPAPRHSSAGCFGTVLDPRKKPVQRWNRVLLLARGMSLAVDPLYFYALSIGRGGWPCLYMDGGLAAGVTVVRTCLDIVHLWHVWLQFRLAYVSKESMVIGCGKLVWDARDIASHYVRSFKGFWFDAFVILPVPQIVYWLVLPKLIREERIKLIMTVILLMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCSEEVCYQFLSSDTTIGSSCGRNSTATFRKPLCLDVNGPFAYGIYKWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLKHRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLEELILDNICDKVKPLVFSKDEKIIREGDPVPRMLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRPVIAVVENGSTERRLLQYAAMFMSFRPHDHLE* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30422601 30427440 - CsaV3_5G038390.1 Csa05g03020 531407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03020 688 ProSiteProfiles cAMP/cGMP binding motif profile. 501 580 IPR000595 -
Csa05g03020 688 SUPERFAMILY Voltage-gated potassium channels 89 422 - -
Csa05g03020 688 CDD CAP_ED 501 608 IPR000595 -
Csa05g03020 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 34 688 - -
Csa05g03020 688 SMART cnmp_10 501 626 IPR000595 -
Csa05g03020 688 Gene3D Jelly Rolls 499 617 IPR014710 -
Csa05g03020 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 34 688 - -
Csa05g03020 688 Gene3D - 132 425 - -
Csa05g03020 688 Pfam Ion transport protein 97 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa05g03020 688 Pfam Cyclic nucleotide-binding domain 521 609 IPR000595 -
Csa05g03020 688 SUPERFAMILY cAMP-binding domain-like 428 615 IPR018490 -
Csa05g03020 688 Gene3D Helix hairpin bin 427 492 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00593 Csa-Chr3:5111379 Csa05g03020 Csa-Chr5:30422601 1.31E-98 dispersed
Csa05g03020 Csa-Chr5:30422601 Csa01g01942 Csa-Chr1:16308637 7.26E-131 dispersed
Csa05g03020 Csa-Chr5:30422601 Csa05g00059 Csa-Chr5:292711 2.35E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03020 K05391 - csv:101203560 1417.91