Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g03044 | ATGCAGGTCGCTGTAAAGGATTCTGCCGAGAGAAATGCCCTGTCTGTTATCAAAGGCTTACTGAAGAATGATGGGGTTCCTGGTCTTTATAGAGGGTTTGGCACAGTAATCACTGGTGCAATTCCTGCAAGGATCATCTTTCTTACTGCTTTAGAGACTACCAAAGTGGGAGCCTATAAACTGGTTGAGCCATTTAAATTTTCTGAACCTACACAGGCTGCTTTGGCAAATGGGTTAGCTGGCATGACTGCATCACTTTTTTCTCAAGCTGTTTTCGTTCCAATTGATGTGATTAGTCAAAAGCTAATGGTTCAAGGATACTCCGGAAATACAAGATATACTGGGGGTTTAGATGTTGCTCGTAAACTGATAAAGTCTAATGGGATTCGGGGACTGTATAAAGGTTTTGGGTTATCTGTTATGACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCGTCATCTGGAGGTTCTTAGGTCAAAACTCTGCTTCAGAGAAATTTTCTCCCAGCCATTCCCAACTTATTTCAGTTCAAGCTGCGGGTGGAATAATTGCAGGTGCAACAGCTTCCTGCATTACAACACCATTGGACACTATAAAGACTCGCTTACAGGTGATGGGCGATAAAGGGAAGACAGCTAGACAAATTGTTGAAAGCTTAATCGCTGAGGATGGGTGGAAAGGTTTTTATAGGGGGCTTGGTCCTCGGTTCTTCAGCATGTCTGCCTGGGGAACATCGATGATATTGGCCTACGAGTACTTGAAGCGGTTGTGTGCAAAAGATGAACAGACTTGA | 816 | 44.0 | MQVAVKDSAERNALSVIKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAYKLVEPFKFSEPTQAALANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTRYTGGLDVARKLIKSNGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRVIWRFLGQNSASEKFSPSHSQLISVQAAGGIIAGATASCITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGFYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDEQT* | 272 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30566402 | 30571907 | - | CsaV3_5G038630.1 | Csa05g03044 | 531431 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g03044 | 271 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 1 | 269 | - | - | |
| Csa05g03044 | 271 | SUPERFAMILY | Mitochondrial carrier | 10 | 261 | IPR023395 | - | |
| Csa05g03044 | 271 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 72 | 160 | IPR018108 | - | |
| Csa05g03044 | 271 | Pfam | Mitochondrial carrier protein | 186 | 268 | IPR018108 | - | |
| Csa05g03044 | 271 | Pfam | Mitochondrial carrier protein | 74 | 161 | IPR018108 | - | |
| Csa05g03044 | 271 | Pfam | Mitochondrial carrier protein | 1 | 56 | IPR018108 | - | |
| Csa05g03044 | 271 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 180 | 264 | IPR018108 | - | |
| Csa05g03044 | 271 | Gene3D | Mitochondrial carrier domain | 1 | 271 | IPR023395 | - | |
| Csa05g03044 | 271 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN | 1 | 269 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g01544 | Csa-Chr3:11534182 | Csa05g03044 | Csa-Chr5:30566402 | 1.58E-92 | dispersed | |
| Csa04g02565 | Csa-Chr4:25248807 | Csa05g03044 | Csa-Chr5:30566402 | 1.35E-07 | dispersed | |
| Csa05g03044 | Csa-Chr5:30566402 | Csa06g01392 | Csa-Chr6:11913493 | 2.58E-10 | dispersed | |
| Csa05g03044 | Csa-Chr5:30566402 | Csa07g02371 | Csa-Chr7:21864313 | 1.08E-66 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g03044 | K15121 | - | csv:101206140 | 526.168 |