Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03051 ATGGGTGCTGTCTGCTGTTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTCTATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAAAGCTTCTTAAATGCTTACACATTGATTTTTCGAAGAGGAGAAGTACATTCTGTCTCCTCATCAATTCAAGGGGCAACATCTATGAATTCTACAGCTTCAACGGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGGTTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGAAGTTGATACAGATTCAGATTCTTTGGGCTCAGGAGGCAAACGGAATGGGTCTGCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAATCGTCTCTAAAGTTCCCTTCAACTAAATCTACCTCTGGACTTGGATATGCATATACATCCTCTGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCGGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGCAATGGCATTCGATGAAACGACTTGA 684 41.96 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDETT* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30639450 30645187 - CsaV3_5G038700.1 Csa05g03051 531438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03051 227 SUPERFAMILY RING/U-box 172 222 - -
Csa05g03051 227 MobiDBLite consensus disorder prediction 103 123 - -
Csa05g03051 227 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Csa05g03051 227 MobiDBLite consensus disorder prediction 56 89 - -
Csa05g03051 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 223 IPR013083 -
Csa05g03051 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Csa05g03051 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Csa05g03051 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Csa05g03051 227 MobiDBLite consensus disorder prediction 56 76 - -
Csa05g03051 227 SMART ring_2 177 217 IPR001841 -
Csa05g03051 227 MobiDBLite consensus disorder prediction 103 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00881 Csa-Chr3:7341754 Csa05g03051 Csa-Chr5:30639450 4.54E-26 dispersed
Csa05g03051 Csa-Chr5:30639450 Csa06g01312 Csa-Chr6:10966909 8.36E-11 dispersed
Csa05g03051 Csa-Chr5:30639450 Csa05g00265 Csa-Chr5:1620832 1.88E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03051 - - csv:101207736 474.167