Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03065 ATGGGAATGAAGAGAACTGAGGCTACTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGTTTCTTCAATAAATGGTTTGTTATCACCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATGCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGTCTTGTCATTGGCTTAGGAACCCCAAGCCAGAACCTGTCTGGAACTCTTTCTTCAACCATTGGGAATTTAACAAACCTTCAAATTGTGTTGTTGCAGAACAACAATATCACAGGTCCAATTCCACCAGAGTTTGGAAGGCTCTCAAAGCTTCAAACACTTGATCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTTCTTTAGGCCATTTAAGAAGCCTACAGTACTTGAGGCTTAACAATAACAGTCTTTCTGGGGCAATTCCAATGTCTTTAGCTAACATGACACAGCTTGCCTTTCTTGATGTGTCTTATAATAACATCAGTGGCCCTCTTCCTAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATTTGTGCGACTGGGTCCGAGGCCGGTTGCCATGGTACAACTCTAATGCCTATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAGATTGAAAAGTCATAAAATGGCCCTTACATTTGGCTTGAGCTTAGCTTGCCTATGTCTGATTTTTCTTGTATTTGGACTGTTCATATGGTGGAGAAGACGAAGCAATCGACCTACATTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATTTGAGAAGGTTTCAATTTAGAGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCGGATGGAACAGTTGTAGCTGTTAAGAGGCTCAAAGATGGGAATGCAAGTAGAGGCGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTGGCCGTGCACCGTCATCTCCTCAGATTATATGGATTTTGCAACACACCAACTGAAAGGCTTCTTGTTTATCCATATATGTCAAATGGAAGTGTTGCATCACGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGAATTGCTATAGGAGCTGCTAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAAGCTGTCGTTGGAGATTTCGGGTTAGCAAAACTTCTGGATCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACTGTGGGACATATAGCTCCCGAGTACCTATCCACCGGACAGTCGTCTGAGAAAACAGATGTTTTCGGATTCGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAATTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTAAAGAGGATTCATCTAGAGAAGAAGCTCGAAGTGTTAGTAGACAAGGATCTAAAAGCCAACTATGACAGAGTTGAACTAGAAGAAATGGTTCAAGTGGCTTTGTTATGCACACAATACTTACCAGGACATAGACCAAAAATGTCAGAAGTTGTGAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAGGCTTCTCAAAGAGTTGATTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCTTCATTGCTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1881 42.32 MGMKRTEATVSCLVASLLFWVSSINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDAVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSTIGNLTNLQIVLLQNNNITGPIPPEFGRLSKLQTLDLSNNFFTGEIPSSLGHLRSLQYLRLNNNSLSGAIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVRLKSHKMALTFGLSLACLCLIFLVFGLFIWWRRRSNRPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKRIHLEKKLEVLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30756982 30762338 - CsaV3_5G038840.1 Csa05g03065 531452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03065 626 SMART serkin_6 306 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g03065 626 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g03065 626 Pfam Protein kinase domain 307 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g03065 626 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Csa05g03065 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Csa05g03065 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Csa05g03065 626 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Csa05g03065 626 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Csa05g03065 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 626 - -
Csa05g03065 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Csa05g03065 626 SUPERFAMILY L domain-like 35 305 - -
Csa05g03065 626 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Csa05g03065 626 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 9 626 - -
Csa05g03065 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01367 Csa-Chr5:14374418 Csa05g03065 Csa-Chr5:30756982 0 dispersed
Csa05g03065 Csa-Chr5:30756982 Csa07g00530 Csa-Chr7:3883580 0 dispersed
Csa01g01919 Csa-Chr1:16062733 Csa05g03065 Csa-Chr5:30756982 0 transposed
Csa01g02655 Csa-Chr1:23569460 Csa05g03065 Csa-Chr5:30756982 1.82E-25 transposed
Csa02g01758 Csa-Chr2:17156879 Csa05g03065 Csa-Chr5:30756982 0 transposed
Csa05g02951 Csa-Chr5:29855722 Csa05g03065 Csa-Chr5:30756982 5.08E-90 transposed
Csa06g03712 Csa-Chr6:29681231 Csa05g03065 Csa-Chr5:30756982 0 transposed
Csa05g02551 Csa-Chr5:26917973 Csa05g03065 Csa-Chr5:30756982 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78297 PF00069 Pkinase 5.70E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03065 - - csv:101209443 1238.02