Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03083 ATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGATTCTTCATTTTTTTCACCTCCTTCTCCTTCTCCTCCGGCGGAATCTGCAACCTCTCCCTCATCTCCAACATCCTCTGTGCCTAATCAGACTGGTGAACCTCCTTCATCACCTTCTAGTTCTTCAGCTCCACCTCCTCAATCACCACCAGCTGTTCCTGATCCTTCTCCTACATTGTCTCCTCCTCCGGTGACAGCATCACCTGCTCCACCAACATCCTCACCTCCTTCTCCCCCTACTGGTTCCACACCTTCACCCCCACAATCTTCGCCCTCACCACCGCCACCCTCGACACCATCCTCCCCATCACCACCTTCAACATCAACCTCTCCACCGCCACCTTCAACAACGACCTCTCCACCGCCACCTTCAACAACAACCTCTCCACCGCCACCTTCAACAACAACCTCTCCACCACCACCTTCAACAACAACCTCTCCACCACCACCTTCAACAACATCACCATCACCACCTCCCCCCGAGGGATCCACTCCCTCTCCTCCTCCACCTGAAGCTTCACCTTCCCCTCCTGAATTGTCACCTCCGCCACCACCAGCAGCGGAAGGTGGTTCTCCACCTCCTCCATCCAATCCTAGACCTCCATCTTCAACTCCTTCTCCCCCTCCCCCCGAAACGATTTCACCTCCTCCATCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAACCACCTAAAGTATCTCCCCCAACCCACAAGGTTTCTCCTCCTCCTGATTCTCAATCTCCACCTTCAGATAACTCCCCTTCACCAAGACCCACAGTACCATCACCTCCTCCTTCAGTCCCTTCATCGTCTGCTCCTCCTCCAGTTGGTGATCCTGGTTCTCCAACTAATTCATCTAGTGGAAGTCCTGTTACTCCTCCAGTTTCTGTTACACCAGAACAACCAATTCCACCAATCAATGGTACCAATACTACAGCAAATAGCTCAGCCACTGGTAAAGGGGGTTTCAGCACTGGAACATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTATTCGTCAGTCTTGTTATCATGGTTATGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATGGCTTCTCCTTTTTCCTCCCAAAACTCAGATTCCCTCTTCCTAAGGCCTCATTCTTCAGTTCCTGTATTAGGAAGTCGTACTGATAGTGAGTTCAAGTATTCACCATCAGAAGGAGGTGGAGTAGGTAATTCGAGATCGTTTGCTTATGATGACCTACACCAGGCAACAGATGGGTTCTCATCAAATAATCTTTTGGGGGAAGGTGGTTTTGGTTGTGTGTACAAAGGCACCCTTGCAGATGGAAGAGACGTAGCTGTTAAACAACTTAAAGTGGGTGGTGGTCAGGGAGAACGAGAGTTCAGAGCTGAAGTTGAGATTATTAGCCGAGTACACCATCGGCATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACAGGCCAGTTTTGGCTTGGGGTACACGTGTTCGAATTGCTGCTGGTGCAGCTCGTGGAATTGCTTATCTACATGAAGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTTCTTGATATCAACTTTGAATCTCAGGTTGCTGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTCATGGGAACCTTTGGATATATGGCCCCAGAGTATGCAACAAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTGATTACTGGCCGAAAGCCTGTAGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCATTGCTTGCGCAAGCTATTGAGGAGGAGAATTTTGATGAATTGGTGGATCCAAGGCTAGACAACAATTACATAGATAGAGAAATGTTTCGGATGATTGAAGCAGCAGCCGCTTGCGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGAGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAGCATTCTGCTCAGATTAGAATGTTTCAAAGAATGGCTTTCGGCAGTCAAGATTACAGTTACGGTTACTCTGATCGAGATCGAAGTCGAAGTTATAGTCAAAGTCAGAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGTCCCTCGGCACCTATGAATCGATCCCGGCAATGGAACATCTGA 2400 47.62 MASPSPSISPPENPSDSSFFSPPSPSPPAESATSPSSPTSSVPNQTGEPPSSPSSSSAPPPQSPPAVPDPSPTLSPPPVTASPAPPTSSPPSPPTGSTPSPPQSSPSPPPPSTPSSPSPPSTSTSPPPPSTTTSPPPPSTTTSPPPPSTTTSPPPPSTTTSPPPPSTTSPSPPPPEGSTPSPPPPEASPSPPELSPPPPPAAEGGSPPPPSNPRPPSSTPSPPPPETISPPPSPPTNVPTPPSSTGEPPKVSPPTHKVSPPPDSQSPPSDNSPSPRPTVPSPPPSVPSSSAPPPVGDPGSPTNSSSGSPVTPPVSVTPEQPIPPINGTNTTANSSATGKGGFSTGTSVAVGSVVGVLFVSLVIMVMWFVQKRKRRKKNIPYTMASPFSSQNSDSLFLRPHSSVPVLGSRTDSEFKYSPSEGGGVGNSRSFAYDDLHQATDGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENRPVLAWGTRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFESQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEEENFDELVDPRLDNNYIDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEHSAQIRMFQRMAFGSQDYSYGYSDRDRSRSYSQSQSSWSRESRDQSPSAPMNRSRQWNI* 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30852236 30858475 + CsaV3_5G039020.1 Csa05g03083 531470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03083 799 MobiDBLite consensus disorder prediction 1 338 - -
Csa05g03083 799 MobiDBLite consensus disorder prediction 53 299 - -
Csa05g03083 799 PRINTS Proline rich extensin signature 22 38 - -
Csa05g03083 799 PRINTS Proline rich extensin signature 50 62 - -
Csa05g03083 799 PRINTS Proline rich extensin signature 65 86 - -
Csa05g03083 799 PRINTS Proline rich extensin signature 86 102 - -
Csa05g03083 799 MobiDBLite consensus disorder prediction 1 32 - -
Csa05g03083 799 MobiDBLite consensus disorder prediction 761 799 - -
Csa05g03083 799 MobiDBLite consensus disorder prediction 765 799 - -
Csa05g03083 799 ProSitePatterns Protein kinases ATP-binding region signature. 448 470 IPR017441 GO:0005524
Csa05g03083 799 MobiDBLite consensus disorder prediction 33 52 - -
Csa05g03083 799 Gene3D Transferase(Phosphotransferase) domain 1 518 730 - -
Csa05g03083 799 SMART serkin_6 442 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g03083 799 Gene3D Phosphorylase Kinase; domain 1 415 517 - -
Csa05g03083 799 CDD STKc_IRAK 448 718 - -
Csa05g03083 799 Pfam Protein tyrosine and serine/threonine kinase 445 715 IPR001245 GO:0004672|GO:0006468
Csa05g03083 799 MobiDBLite consensus disorder prediction 321 338 - -
Csa05g03083 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 562 574 IPR008271 GO:0004672|GO:0006468
Csa05g03083 799 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 164 770 - -
Csa05g03083 799 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 164 770 - -
Csa05g03083 799 ProSiteProfiles Protein kinase domain profile. 442 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g03083 799 SUPERFAMILY Protein kinase-like (PK-like) 425 715 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03083 Csa-Chr5:30852236 Csa01g02931 Csa-Chr1:25716837 5.04E-100 dispersed
Csa01g01727 Csa-Chr1:13899884 Csa05g03083 Csa-Chr5:30852236 1.00E-155 transposed
Csa01g02911 Csa-Chr1:25529067 Csa05g03083 Csa-Chr5:30852236 1.02E-82 transposed
Csa02g00125 Csa-Chr2:866565 Csa05g03083 Csa-Chr5:30852236 9.83E-155 transposed
Csa02g01248 Csa-Chr2:12215725 Csa05g03083 Csa-Chr5:30852236 5.91E-145 transposed
Csa04g00511 Csa-Chr4:3365923 Csa05g03083 Csa-Chr5:30852236 4.32E-142 transposed
Csa05g02116 Csa-Chr5:24355929 Csa05g03083 Csa-Chr5:30852236 4.04E-68 transposed
Csa05g02336 Csa-Chr5:25732365 Csa05g03083 Csa-Chr5:30852236 1.16E-168 transposed
Csa05g02558 Csa-Chr5:26969429 Csa05g03083 Csa-Chr5:30852236 1.11E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78298 PF07714 PK_Tyr_Ser-Thr 1.50E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03083 - - csv:101211665 932.169