Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03088 ATGGCCGTTCCCGTGGTTCAGTTCCCGATCTTCCTGGCTGTCAGAGTCCTCGGAATGCTTGTGGCAGCTCTTCTTTTCATGTGGACCTTGCATTTCCGTGGAGGATTGGCACTTATCTCAGACAACAAGGATCATATCTTCAATGTCCATCCGGTTCTTATGGTGACTGGACTTATTCTTCTAAATGGTGAAGCAATGTTAGCATACAAGACAGTTTCAGGAACCAAAAACTTCAAAAAACTAGTTCATCTCACTCTCCAATTTGTTGCATTCTTTTTAAGTCTGATTGGCATATGGGCTGCCCTGAAGTTCCACAACGACAAAGGAATCGAAAACTTTTACAGTCTACATTCATGGTTGGGCTTAGTTTCTATCTTTCTATTTGGCGTCCAGTGGTCTGCAGGTTTTGTAACCTTTTGGTACCCAGGTGGGTCTAGAAACAGCAGAGCTACTCTATTGCCATGGCATGTTTTCTTTGGCGTTTACATATATGGCCTCTCCATTGCTACAACCGTAACTGGATTGTTGGAAAAAGCTACATTCCTTCAAACTAGCAAGGTAATTTCACGTTATTCGAATGAGGCTTTGCTGATAAATTCATTGGGTGTCCTCATTGTTCTCTTGGGAGGTCTCGTGATTTTGGCGGTTATCGCTCCGTCGTATGCTAAAGGTGATATTAACAGAGGGCCAGCAGAATAG 699 43.35 MAVPVVQFPIFLAVRVLGMLVAALLFMWTLHFRGGLALISDNKDHIFNVHPVLMVTGLILLNGEAMLAYKTVSGTKNFKKLVHLTLQFVAFFLSLIGIWAALKFHNDKGIENFYSLHSWLGLVSIFLFGVQWSAGFVTFWYPGGSRNSRATLLPWHVFFGVYIYGLSIATTVTGLLEKATFLQTSKVISRYSNEALLINSLGVLIVLLGGLVILAVIAPSYAKGDINRGPAE* 233
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 30889864 30893045 + CsaV3_5G039070.1 Csa05g03088 531475
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03088 232 CDD Cyt_b561_ACYB-1_like 40 183 - -
Csa05g03088 232 SMART 561_7 49 175 IPR006593 -
Csa05g03088 232 Pfam Eukaryotic cytochrome b561 49 181 IPR006593 -
Csa05g03088 232 PANTHER CYTOCHROME B561-RELATED 1 228 IPR043205 GO:0016491
Csa05g03088 232 PANTHER B561, PUTATIVE-RELATED 1 228 - -
Csa05g03088 232 ProSiteProfiles Cytochrome b561 domain profile. 13 217 IPR006593 -
Csa05g03088 232 Gene3D - 1 228 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04686 Csa-Chr3:40719163 Csa05g03088 Csa-Chr5:30889864 2.59E-67 transposed
Csa05g01215 Csa-Chr5:12694238 Csa05g03088 Csa-Chr5:30889864 1.72E-49 transposed
Csa05g01961 Csa-Chr5:22992737 Csa05g03088 Csa-Chr5:30889864 9.24E-54 transposed
Csa05g02570 Csa-Chr5:27054633 Csa05g03088 Csa-Chr5:30889864 4.22E-63 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03088 K08360 - csv:101212633 437.958