Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g03088 | ATGGCCGTTCCCGTGGTTCAGTTCCCGATCTTCCTGGCTGTCAGAGTCCTCGGAATGCTTGTGGCAGCTCTTCTTTTCATGTGGACCTTGCATTTCCGTGGAGGATTGGCACTTATCTCAGACAACAAGGATCATATCTTCAATGTCCATCCGGTTCTTATGGTGACTGGACTTATTCTTCTAAATGGTGAAGCAATGTTAGCATACAAGACAGTTTCAGGAACCAAAAACTTCAAAAAACTAGTTCATCTCACTCTCCAATTTGTTGCATTCTTTTTAAGTCTGATTGGCATATGGGCTGCCCTGAAGTTCCACAACGACAAAGGAATCGAAAACTTTTACAGTCTACATTCATGGTTGGGCTTAGTTTCTATCTTTCTATTTGGCGTCCAGTGGTCTGCAGGTTTTGTAACCTTTTGGTACCCAGGTGGGTCTAGAAACAGCAGAGCTACTCTATTGCCATGGCATGTTTTCTTTGGCGTTTACATATATGGCCTCTCCATTGCTACAACCGTAACTGGATTGTTGGAAAAAGCTACATTCCTTCAAACTAGCAAGGTAATTTCACGTTATTCGAATGAGGCTTTGCTGATAAATTCATTGGGTGTCCTCATTGTTCTCTTGGGAGGTCTCGTGATTTTGGCGGTTATCGCTCCGTCGTATGCTAAAGGTGATATTAACAGAGGGCCAGCAGAATAG | 699 | 43.35 | MAVPVVQFPIFLAVRVLGMLVAALLFMWTLHFRGGLALISDNKDHIFNVHPVLMVTGLILLNGEAMLAYKTVSGTKNFKKLVHLTLQFVAFFLSLIGIWAALKFHNDKGIENFYSLHSWLGLVSIFLFGVQWSAGFVTFWYPGGSRNSRATLLPWHVFFGVYIYGLSIATTVTGLLEKATFLQTSKVISRYSNEALLINSLGVLIVLLGGLVILAVIAPSYAKGDINRGPAE* | 233 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30889864 | 30893045 | + | CsaV3_5G039070.1 | Csa05g03088 | 531475 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g03088 | 232 | CDD | Cyt_b561_ACYB-1_like | 40 | 183 | - | - | |
| Csa05g03088 | 232 | SMART | 561_7 | 49 | 175 | IPR006593 | - | |
| Csa05g03088 | 232 | Pfam | Eukaryotic cytochrome b561 | 49 | 181 | IPR006593 | - | |
| Csa05g03088 | 232 | PANTHER | CYTOCHROME B561-RELATED | 1 | 228 | IPR043205 | GO:0016491 | |
| Csa05g03088 | 232 | PANTHER | B561, PUTATIVE-RELATED | 1 | 228 | - | - | |
| Csa05g03088 | 232 | ProSiteProfiles | Cytochrome b561 domain profile. | 13 | 217 | IPR006593 | - | |
| Csa05g03088 | 232 | Gene3D | - | 1 | 228 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g04686 | Csa-Chr3:40719163 | Csa05g03088 | Csa-Chr5:30889864 | 2.59E-67 | transposed | |
| Csa05g01215 | Csa-Chr5:12694238 | Csa05g03088 | Csa-Chr5:30889864 | 1.72E-49 | transposed | |
| Csa05g01961 | Csa-Chr5:22992737 | Csa05g03088 | Csa-Chr5:30889864 | 9.24E-54 | transposed | |
| Csa05g02570 | Csa-Chr5:27054633 | Csa05g03088 | Csa-Chr5:30889864 | 4.22E-63 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g03088 | K08360 | - | csv:101212633 | 437.958 |