Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03102 ATGCCTATCATGCTCTTGCCACTCCTCACAACTCTAGCCCTCCTAACCACGTCCTTTTTCATCTTCTCTTTACTATACGACACCCTTTCTTGCTACTTGTTTACTCCTCGACGCATCAAGCAAAAGATGGCCAAGCAAGGTGTTCATGGCCCCAAACCCCGTCCTCTCCTCGGTAACATCCTCGACGTCGCTTCCCTCCTCTCCAAGTCTACCTCCTCCGACATGCCCTCCATCTCTCACGACCTCGTCCCCCGTCTCCTCCCTCATTTCCTCGCCTGGTCCTCCCAATTCGGGAAGAGATTTATATTTTGGAATGGGATTGAGCCAAGAATGTGTTTAACCGAAACCGATTTGATAAAAGAGCTTTTATCAAAATACAGCGCGGTTTCAGGGAAATCATGGCTACAACAACAAGGCTCTAAGCATTTTATAGGACGAGGTCTTTTAATGGCAAACGGTCAAAACTGGTTCCATCAACGACATATCGTTGCACCAGCTTTCGTCGGGGATCGACTTAAGAGTTACGCAGGGTACATGGTGGAGTGTACAAAAGAGATGCTTGAATCATTAGAGAAGGAGGTAAAATCGGGGAGATCAGAATTTGAAATCGGGGAGTATATGACGAGACTTACTGCTGATATAATTTCGCGAACGGAGTTTGAAAGTAGTTTTGAAAAGGGAAAACAAATCTTTCATTTGCTTACTGTTTTACAGCATCTTTGTGCTCAGGCCAGCCGCCACCTCTGTCTTCCCGGTAGCCGGTTTTTTCCAAGTAAATACAACAGAGAGATAAAGGCATTGAAAGGGAAAGTGGAGGAATTATTAATGGAAATAATACAAAGCAGAAGGGATTGTGTGGAAATTGGGAGAAGCAGTTCATATGGAAATGATTTATTAGGAATGTTATTAAATGAAATGCAAAAGAAAAAATTGGATGGAAACAATGGTTTGAGTTTGAATTTGCAAATTATAATGGATGAATGCAAAACCTTCTTCTTTGCTGGCCATGAAACCACTGCTCTTTTACTCACTTGGACTGTCATGTTATTAGCCACTAACCCTACTTGGCAAAATAAAGTTCGAGCCGAAGTTATGGCCGTTTGTGGTTCGGAAACCCCTTCGTTTCATCATCTTTCCAAACTTTCTCTGTTGAGTATGGTGATAAATGAGTCACTAAGACTATACCCACCAGCAAGTATTCTTCCAAGAATGGCATTTGAAGATATAAAACTTGGAGATTTGGAGATTCCAAAAGGATTATCAATATGGATTCCTGTTTTAGCCATTCATCACAGTGAAGAATTATGGGGCAAAGATGCAAATGAGTTCAATCCCGAAAGATTCGCAAATTCAAAACCTTTTACTTCGGGTGGTTTCATCCCTTTTGCTTCTGGCCCTCGTAATTGCGTCGGACAATCTTTCGCTCTTATGGAAACTAAGATCATTCTGGCTATGCTTATCTCCAAGTTTAGTTTCACGATCTCTGATAGTTATCGACATGCACCTGTTGTCGTCCTCACTATAAAACCCAAATACGGTGTTCAAGTTTGTTTGGAGCCTTTGAATTAA 1569 41.94 MPIMLLPLLTTLALLTTSFFIFSLLYDTLSCYLFTPRRIKQKMAKQGVHGPKPRPLLGNILDVASLLSKSTSSDMPSISHDLVPRLLPHFLAWSSQFGKRFIFWNGIEPRMCLTETDLIKELLSKYSAVSGKSWLQQQGSKHFIGRGLLMANGQNWFHQRHIVAPAFVGDRLKSYAGYMVECTKEMLESLEKEVKSGRSEFEIGEYMTRLTADIISRTEFESSFEKGKQIFHLLTVLQHLCAQASRHLCLPGSRFFPSKYNREIKALKGKVEELLMEIIQSRRDCVEIGRSSSYGNDLLGMLLNEMQKKKLDGNNGLSLNLQIIMDECKTFFFAGHETTALLLTWTVMLLATNPTWQNKVRAEVMAVCGSETPSFHHLSKLSLLSMVINESLRLYPPASILPRMAFEDIKLGDLEIPKGLSIWIPVLAIHHSEELWGKDANEFNPERFANSKPFTSGGFIPFASGPRNCVGQSFALMETKIILAMLISKFSFTISDSYRHAPVVVLTIKPKYGVQVCLEPLN* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31027128 31031066 + CsaV3_5G039210.1 Csa05g03102 531489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03102 522 Coils Coil 264 284 - -
Csa05g03102 522 PANTHER CYTOCHROME P450 FAMILY MEMBER 13 517 - -
Csa05g03102 522 PANTHER CYTOCHROME P450 FAMILY PROTEIN 13 517 - -
Csa05g03102 522 Coils Coil 180 200 - -
Csa05g03102 522 Pfam Cytochrome P450 95 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 Gene3D Cytochrome P450 32 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS E-class P450 group I signature 94 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 SUPERFAMILY Cytochrome P450 50 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g03102 522 PRINTS P450 superfamily signature 469 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02064 Csa05g03102 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02064 Csa-Chr3:16757255 Csa05g03102 Csa-Chr5:31027128 0 dispersed
Csa05g00465 Csa-Chr5:3021204 Csa05g03102 Csa-Chr5:31027128 2.66E-107 dispersed
Csa05g00918 Csa-Chr5:7177442 Csa05g03102 Csa-Chr5:31027128 2.99E-104 dispersed
Csa05g03102 Csa-Chr5:31027128 Csa03g04190 Csa-Chr3:36743086 6.59E-116 dispersed
Csa05g03102 Csa-Chr5:31027128 Csa02g00167 Csa-Chr2:1164961 2.86E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03102 K10717 - csv:101215037 1015.37