Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03116 ATGGCTTCTTTGGCTGCTTCCACCGCCGCCGCCTCCCTCGGCGTCTCTGAAATGCTAAGAAACCCTCTTAGCTTCTCCTCCAGGTCCGCTCCCTCCCCTTCTACCCCCGCCACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCCGCAGCACCTGCCAAGCCAAAGCCCTCTGCTGCCTCTCCCGTCAACGACGAGCTCGCCAAGTGGTATGGGCCGGATAGAAGGATTTTCTTGCCAGATGGTTTGTTGGACCGATCCGAGATCCCCGAGTACTTGAACGGAGAAGTCCCCGGCGACTATGGTTATGACCCCTTTGGACTCAGCAAGAAGCCCGAAGACTTCACCAAATACCAAGCATTTGAATTGATTCATGCAAGATGGGCTATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGCGCTAACTGTGGCCCCGAAGCTGTCTGGTTCAAGACCGGAGCTCTACTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCCGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATACTACAGAATCATCAACGGCTTGAACTTTGAGGACAAGCTTCACCCAGGAGGGCCATTCGACCCATTGGGGTTAGCAGACGACCCAGACCAGGCAGCAATCTTGAAGGTGAAAGAGATCAAGAATGGAAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCAGTGGAGAATTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAATCTGCTCACAGTCATTTCAGGGAATGCTGAAAGAGTTCCAACTCTTTAA 867 50.87 MASLAASTAAASLGVSEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31132138 31133860 + CsaV3_5G039350.1 Csa05g03116 531503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03116 288 Pfam Chlorophyll A-B binding protein 90 251 IPR022796 -
Csa05g03116 288 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 288 IPR001344 GO:0009765|GO:0016020
Csa05g03116 288 Gene3D Chlorophyll a/b binding protein domain 77 288 - -
Csa05g03116 288 SUPERFAMILY Chlorophyll a-b binding protein 70 278 - -
Csa05g03116 288 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03116 Csa-Chr5:31132138 Csa06g01182 Csa-Chr6:9988814 5.87E-67 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03116 K08916 - csv:101218137 545.428