Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03126 ATGATGAAGCTTACGCGCTTGTTTTCACGGAACCAGCTATTTGAACAAATTGTGTGGAAGAAAGCTGGTTATGTTGGACATCCTTTGGGATCACACCCTTTCTCATCTAATGCTGGGATTTCGGATTCTACACAGAATTTTACTCGTACAGTGACAAAGAATGCAGGTGGTCGAGTTTTTGCTTCCTATCATGTGTATAAGGGCAAAGCTGCACTCTCCATGGAACCTTGTATGCCAACTTTCACTAAAGTGGAGTCTGGGAATTTTATAATGGATCGACGTGGTTCAATAATGCTGACATTTGCTCCTGCCGTAGGCGAGCGCAAGTATGATTGGACAAGGAAACAGTTGTTTGCATTGTCCGCAACAGAGATTGGTTCTTTAATCAGTTTGGGTCCCAGAGATTCATGTGAATTCTTCCATGACCCCGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAGCTATTAAGGCCCATACAGATGGCAATGGCTATTTCTTCTCTTTGAATGTTGTTAATAAACCACAAAACACCAACGATTATTTGAGTGTTCCCTTCACAACAGGCGAATTTTCTGTGATGAAGACTGCTTGCAGTTTTGCTCTGCCTAGCCTTCTTGGTTGGGACCGGGTGACCAATCCTAATCTTGGCGTGGGTAGCGTTTTTCAACCAAAAAAAATTGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATAA 726 42.7 MMKLTRLFSRNQLFEQIVWKKAGYVGHPLGSHPFSSNAGISDSTQNFTRTVTKNAGGRVFASYHVYKGKAALSMEPCMPTFTKVESGNFIMDRRGSIMLTFAPAVGERKYDWTRKQLFALSATEIGSLISLGPRDSCEFFHDPGMLSSTAGQVRKSLAIKAHTDGNGYFFSLNVVNKPQNTNDYLSVPFTTGEFSVMKTACSFALPSLLGWDRVTNPNLGVGSVFQPKKIDREALSLEWER* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31196035 31202020 + CsaV3_5G039450.1 Csa05g03126 531513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03126 241 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697|GO:0006355|GO:0006952
Csa05g03126 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 241 IPR013742 GO:0003697|GO:0006355|GO:0006952
Csa05g03126 241 SUPERFAMILY ssDNA-binding transcriptional regulator domain 57 240 IPR009044 GO:0003677|GO:0006355
Csa05g03126 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 241 - -
Csa05g03126 241 Gene3D Transcriptional Coactivator Pc4; Chain A 51 222 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03126 Csa-Chr5:31196035 Csa06g02243 Csa-Chr6:20165050 1.82E-55 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31883 PF08536 Whirly 9.00E-56 CL0609 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03126 - - csv:101219085 492.656