Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03126 ATGATGAAGCTTACGCGCTTGTTTTCACGGAACCAGCTATTTGAACAAATTGTGTGGAAGAAAGCTGGTTATGTTGGACATCCTTTGGGATCACACCCTTTCTCATCTAATGCTGGGATTTCGGATTCTACACAGAATTTTACTCGTACAGTGACAAAGAATGCAGGTGGTCGAGTTTTTGCTTCCTATCATGTGTATAAGGGCAAAGCTGCACTCTCCATGGAACCTTGTATGCCAACTTTCACTAAAGTGGAGTCTGGGAATTTTATAATGGATCGACGTGGTTCAATAATGCTGACATTTGCTCCTGCCGTAGGCGAGCGCAAGTATGATTGGACAAGGAAACAGTTGTTTGCATTGTCCGCAACAGAGATTGGTTCTTTAATCAGTTTGGGTCCCAGAGATTCATGTGAATTCTTCCATGACCCCGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAGCTATTAAGGCCCATACAGATGGCAATGGCTATTTCTTCTCTTTGAATGTTGTTAATAAACCACAAAACACCAACGATTATTTGAGTGTTCCCTTCACAACAGGCGAATTTTCTGTGATGAAGACTGCTTGCAGTTTTGCTCTGCCTAGCCTTCTTGGTTGGGACCGGGTGACCAATCCTAATCTTGGCGTGGGTAGCGTTTTTCAACCAAAAAAAATTGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATAA 726 42.7 MMKLTRLFSRNQLFEQIVWKKAGYVGHPLGSHPFSSNAGISDSTQNFTRTVTKNAGGRVFASYHVYKGKAALSMEPCMPTFTKVESGNFIMDRRGSIMLTFAPAVGERKYDWTRKQLFALSATEIGSLISLGPRDSCEFFHDPGMLSSTAGQVRKSLAIKAHTDGNGYFFSLNVVNKPQNTNDYLSVPFTTGEFSVMKTACSFALPSLLGWDRVTNPNLGVGSVFQPKKIDREALSLEWER* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31196035 31202020 + CsaV3_5G039450.1 Csa05g03126 531513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03126 241 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697|GO:0006355|GO:0006952
Csa05g03126 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 241 IPR013742 GO:0003697|GO:0006355|GO:0006952
Csa05g03126 241 SUPERFAMILY ssDNA-binding transcriptional regulator domain 57 240 IPR009044 GO:0003677|GO:0006355
Csa05g03126 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 241 - -
Csa05g03126 241 Gene3D Transcriptional Coactivator Pc4; Chain A 51 222 IPR009044 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03126 - - - csv:101219085 492.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03126 Csa-Chr5:31196035 Csa06g02243 Csa-Chr6:20165050 1.82E-55 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02243 . 46 277 Whirly Transcription Factor Family AT1G14410 67.7 1.7e-90 329.3
Csa05g03126 . 57 242 Whirly Transcription Factor Family AT1G71260 58.0 1.6e-58 223.0
Csa06g02243 . 46 277 Whirly Transcription Factor Family AT2G02740 66.5 1.1e-87 320.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31883 PF08536 Whirly 9.00E-56 CL0609 Csa TF