Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03127 ATGGCTTATGATCATTTGGATCCATCTAAAAGCTATACAGTTGCTTCAGGGCCAGGTTCTGCTTCAAAGCCTGCACCTGAATTGAAGGTTTATCAGTTTTTTGTGTTCTGTATTCCAATTCTTTTCACGTTCATTCTTCTTTTCCTTTTCTATCTCCTTTACCTTCGTCGACGAAGGGCCGATTGGACTTCGATTCGAATGCGAACTTCAGCTGCTGCTAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAGGAGTTCAGAGAGATGCTTCCTATCATTGTATACAATGAGACATTCTTTGTCACTGATACACTATGTTCAGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAAATACCAACTTGTGGACATGTATTTCACATGGACTGCATTGATCATTGGCTAGCCAACCACAACACTTGCCCACTCTGCCGTCTCTCCGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACATGACGAACCACAATGCGAAGAACCACCTCCTCCACATAGTAATCAAGCTTGTCAACATACAACACCTCCAGTGTAA 585 41.88 MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHDEPQCEEPPPPHSNQACQHTTPPV* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31204092 31206961 - CsaV3_5G039460.1 Csa05g03127 531514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03127 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
Csa05g03127 194 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Csa05g03127 194 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 158 - -
Csa05g03127 194 MobiDBLite consensus disorder prediction 1 20 - -
Csa05g03127 194 MobiDBLite consensus disorder prediction 168 194 - -
Csa05g03127 194 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 10 158 - -
Csa05g03127 194 SUPERFAMILY RING/U-box 93 161 - -
Csa05g03127 194 SMART ring_2 109 150 IPR001841 -
Csa05g03127 194 Pfam Ring finger domain 109 151 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00192 Csa-Chr5:1135262 Csa05g03127 Csa-Chr5:31204092 3.29E-24 dispersed
Csa05g03127 Csa-Chr5:31204092 Csa02g00400 Csa-Chr2:2774605 1.14E-17 dispersed
Csa05g03127 Csa-Chr5:31204092 Csa02g01073 Csa-Chr2:10465735 4.09E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03127 K19039 - csv:101219324 383.259