Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03182 ATGGACCCCAATTATAGAGGCGTTCGTAAGCGCAAATGGGGAAAATGGGTTTCCGAAATTCGTGAACCGGGCAAGAAGACCCGAATTTGGCTCGGTAGCTACCATCTCCCTGAAATGGCTGCTGCCGCTTACGACGTCGCTGCCCTCCACCTCCGCGGCCCTGACGCCCGTCTCAACTTCCCTGACCTCGCTGACTCATTCCCACGCCCTGCCAGCTCCTCCCCTGACCACATTCAGGCCGCTGCCCACATGGCTGCATTGCGCTTCGCTAACACCAAGCCACCCGAACCGGCGCCTGCCCCGGTTCGGGTGGGGCTGTCGGCTAGTCAGATTCAGGCGATTAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTAGAGGGTCATGAGTGGGATGATGATGAAGAATATAATTACTACAATAACATGCAACATCATCATGATCACTCTATTTGGGATTATTAA 492 55.08 MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNFPDLADSFPRPASSSPDHIQAAAHMAALRFANTKPPEPAPAPVRVGLSASQIQAINESPLDSPTMWMQMAAEALSLEGHEWDDDEEYNYYNNMQHHHDHSIWDY* 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31539266 31540360 - CsaV3_5G040010.1 Csa05g03182 531569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03182 163 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700|GO:0006355
Csa05g03182 163 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Csa05g03182 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 161 - -
Csa05g03182 163 Pfam AP2 domain 3 53 IPR001471 GO:0003700|GO:0006355
Csa05g03182 163 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Csa05g03182 163 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700|GO:0006355
Csa05g03182 163 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677
Csa05g03182 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 4 161 - -
Csa05g03182 163 CDD AP2 3 63 IPR001471 GO:0003700|GO:0006355
Csa05g03182 163 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03182 Csa-Chr5:31539266 Csa01g02038 Csa-Chr1:17372663 3.82E-32 dispersed
Csa05g03182 Csa-Chr5:31539266 Csa05g03184 Csa-Chr5:31560805 2.79E-61 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31884 PF00847 AP2 3.50E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03182 - - csv:101207003 346.28