Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03184 ATGTTAAAATTAATCAGTTGCTCAATGAGGAGTCATGGCGCAGCCACGTCGAGCTACCGTGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGTGAACCAGGAAAGAAGACGAGGATATGGTTGGGGAGCTTTGAGACCCCGGAGATGGCGGCGACGGCCTATGATGTAGCTGCTTATCACTTTCGTGGTCGTGATGCTCGCCTCAACTTCCCACATCTTGTCAACTCTCTCCCTTTCCCTCTTAGCTCCACTCCTGATGACATTCGTCTGGCTGCCCATGAGGCAGCTTTACGGGTTCGAACAACGCCTGTTGTTGCATCGTCTGATGATCAGCTGGGTGACGAAACTTCCACCTTGGGGCTTGCGCCAGTCACTGTCCGATTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCGACCTTGGATTCGCCTAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGATCAAGAGTTTTCAAATGGTAATGTGTTTGTTGATCATGACATGCAGGATTATGATCAGATGTGGGAGAATATGCATAATGATTCACTTTGGGATCCTTAG 585 49.4 MLKLISCSMRSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAATAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRLAAHEAALRVRTTPVVASSDDQLGDETSTLGLAPVTVRLSPSQIQAINESTLDSPKMWMQMSSESLLMDQEFSNGNVFVDHDMQDYDQMWENMHNDSLWDP* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31560805 31562596 - CsaV3_5G040030.1 Csa05g03184 531571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03184 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 8 193 - -
Csa05g03184 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 193 - -
Csa05g03184 194 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Csa05g03184 194 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Csa05g03184 194 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Csa05g03184 194 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Csa05g03184 194 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Csa05g03184 194 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Csa05g03184 194 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Csa05g03184 194 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00219 Csa-Chr4:1312269 Csa05g03184 Csa-Chr5:31560805 1.91E-24 dispersed
Csa05g03122 Csa-Chr5:31166186 Csa05g03184 Csa-Chr5:31560805 3.14E-36 dispersed
Csa05g03184 Csa-Chr5:31560805 Csa02g00103 Csa-Chr2:717915 1.25E-30 dispersed
Csa06g02954 Csa-Chr6:25584512 Csa05g03184 Csa-Chr5:31560805 1.18E-24 dispersed
Csa05g03182 Csa-Chr5:31539266 Csa05g03184 Csa-Chr5:31560805 2.79E-61 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31885 PF00847 AP2 6.80E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03184 - - csv:101207243 385.571