Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03200 ATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCCATCAAAGGATTGGACAGGGAACTTACAGCAGTGTATATAAAGCTCGTGACCTTGAAACTGGTAAAATCGTGGCACTGAAAAAAGTAAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTCATGGCTAGGGAAATTTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGAGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTCGAGTACATGGAGCATGACCTTGCTGGCCTTGCAGCAGTTCCTGGACATAAGTTTACTGAGGCTCAGATTAAATGTTATGTGCAACAATTGCTGCATGGACTCGAACACTGTCATAGTCGGGGAATTCTGCACCGGGATATCAAAGGTTCAAATCTTCTAGTTGACAATAATGGTGTGCTCAAGATTGGAGACTTCGGTCTTGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACGAGTCGGGTTGTGACGTTGTGGTACAGAGCACCCGAGCTTTTGCTTGGTGCTACCCAATATGGACCTGGCATAGATCTCTGGAGCTGTGGTTGTATCGTCGCTGAACTATTTGCTGGAAAACCTATTATGCCAGGAAGAACGGAGGTGGAGCAAATGCATAAAATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCGGAGAACTAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTCCTTCAGCTCTGGCTCTTGTGAATAAACTACTTGCTATTGAACCAGAGCACAGAGGATCGGCTACTTTAGCCCTCAGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGCGACCCGTCAAGCTTACCAAAATATCCTCCGAGCAAAGAATTCGATGCTAAGCTGCGGAATGAAGAAGAAAGAAAGAAAAAAGCAGAAGCTGTGAAGGGACGTCATCCTGAATCAGTAAGAAGGGGCTCAAGGGACACAAAAGCAGTTCCTACTCCCGAATTCAATACTCAAGGAGATATTCCTATAAAGGCACTCCCAATCTCGAAAAAAACGAGTACGAAATTCAACCCTCAAGAGGACGGTGAGCCTTCGAGAGTTGTGCAGAATCGGTACAACCATTCAACATCTATGGTGCACCCAACCGTTGCAGGTTCATGGGGTAAGCCTACTGGAGCCTTGAGAAATCATGCAGAGTTGAAGACACAGAAATCTCAGATGCATCGGTCAGTGGGAGATTTATCAGCCTCTTCTCTTAAGAAGGAAGATTCAGTGTCTAATAAAGATTCCGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATACAGCAGGCTTTTCGAAAGGCACGACTTGACAAAGCAAAGACGACCAAGAGTTACGATGATTAG 1518 44.66 MAFMVSFCCWRSHQRIGQGTYSSVYKARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLESLVTSRMSGSLYLVFEYMEHDLAGLAAVPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPGIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPHATSFKPQHRYKSCLSETFKSFPPSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKKKAEAVKGRHPESVRRGSRDTKAVPTPEFNTQGDIPIKALPISKKTSTKFNPQEDGEPSRVVQNRYNHSTSMVHPTVAGSWGKPTGALRNHAELKTQKSQMHRSVGDLSASSLKKEDSVSNKDSGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARLDKAKTTKSYDD* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31644976 31650511 + CsaV3_5G040190.1 Csa05g03200 531587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03200 505 MobiDBLite consensus disorder prediction 323 360 - -
Csa05g03200 505 SUPERFAMILY Protein kinase-like (PK-like) 10 302 IPR011009 -
Csa05g03200 505 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Csa05g03200 505 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 14 495 - -
Csa05g03200 505 CDD STKc_CDK9_like 16 294 - -
Csa05g03200 505 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Csa05g03200 505 SMART serkin_6 10 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g03200 505 MobiDBLite consensus disorder prediction 427 441 - -
Csa05g03200 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Csa05g03200 505 Pfam Protein kinase domain 12 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g03200 505 MobiDBLite consensus disorder prediction 323 348 - -
Csa05g03200 505 MobiDBLite consensus disorder prediction 422 452 - -
Csa05g03200 505 PANTHER CELL DIVISION PROTEIN KINASE 14 495 - -
Csa05g03200 505 Gene3D Transferase(Phosphotransferase) domain 1 93 334 - -
Csa05g03200 505 ProSiteProfiles Protein kinase domain profile. 10 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g03200 505 Coils Coil 478 498 - -
Csa05g03200 505 Coils Coil 312 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00932 Csa-Chr5:7416608 Csa05g03200 Csa-Chr5:31644976 1.52E-16 dispersed
Csa05g03200 Csa-Chr5:31644976 Csa03g01412 Csa-Chr3:10610724 0 dispersed
Csa05g03200 Csa-Chr5:31644976 Csa02g00346 Csa-Chr2:2385123 6.10E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78301 PF00069 Pkinase 1.40E-69 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03200 K08819 - csv:101208709 989.178