Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03212 ATGGCTCGTGGGAAAGTTCAAATGAAAAGGATTGAGAATCCAGTGCACAGACAAGTTACTTTCTGCAAGCGTCGAGCTGGGCTCCTCAAGAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGACTCTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCAATTCATCACCAAACTTTGGAAGTAAAAGAGGAGATCATCAGGCTGAAACAAGAAATTGAAGTCCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAGGGGAAGGAATAATGACATTGGATGAGCTTGATATCTTTGAGAAGCAACTTGAGATTTGGATTTGTCAAGTGCGTTCTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTCATACTGACAGCTGCCAACAAATATCTTCATGATAAGATGGAGGCCGAAAACATTAGCAACACAACTAACATGGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGCTATTTCAGCTTTGCACTTAA 624 42.79 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIHHQTLEVKEEIIRLKQEIEVLKGLRNALGGGGGEGIMTLDELDIFEKQLEIWICQVRSTKMKFMCEEIEALRNQEFILTAANKYLHDKMEAENISNTTNMEPVNITNCQYPLTIQDELFQLCT* 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31702786 31707306 + CsaV3_5G040310.1 Csa05g03212 531599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03212 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Csa05g03212 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa05g03212 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa05g03212 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa05g03212 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa05g03212 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 204 - -
Csa05g03212 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa05g03212 207 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa05g03212 207 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Csa05g03212 207 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 204 - -
Csa05g03212 207 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Csa05g03212 207 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Csa05g03212 207 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03212 Csa-Chr5:31702786 Csa06g00820 Csa-Chr6:6576874 8.47E-41 dispersed
Csa05g03212 Csa-Chr5:31702786 Csa05g03218 Csa-Chr5:31724175 6.41E-36 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31886 PF01486 K-box 1.40E-16 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03212 - - csv:105435626 398.282