Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03218 ATGGGGAGAGGAAAGATAGAGATAAAGAGAATAGAGAACACAACAAATAGACAAGTTACATTCTGTAAGAGAAGAAATGGACTTTTGAAAAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGCATCAAAACAACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACTAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAACTGCGTCAACAGATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACTGTCAAAGAACTCAAGCAGCTTGAAAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGCACGAAATGTTGCTAGCAGAAATTGAGTACCTTCAGAAAAGGGAGATTGAGCTGGAGAACGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTAGAGAGGGTTCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATACAAGCATTGGCTAACTCTCGCAATTTCTTCTCTCCCAATATCATGGAACCTGCTGGACCTGTTTCTTACTCTCATCAAGACAAGAAAATGCTTCATCTTGGGTGA 678 40.41 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERVQQANMVSGQELNAIQALANSRNFFSPNIMEPAGPVSYSHQDKKMLHLG* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31724175 31731062 + CsaV3_5G040370.1 Csa05g03218 531605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03218 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 213 - -
Csa05g03218 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 213 - -
Csa05g03218 225 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Csa05g03218 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa05g03218 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa05g03218 225 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa05g03218 225 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Csa05g03218 225 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Csa05g03218 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa05g03218 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa05g03218 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa05g03218 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa05g03218 225 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa05g03218 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa05g03218 225 Coils Coil 124 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02284 Csa-Chr1:19982103 Csa05g03218 Csa-Chr5:31724175 3.32E-94 dispersed
Csa04g02049 Csa-Chr4:20750323 Csa05g03218 Csa-Chr5:31724175 2.50E-28 dispersed
Csa05g03218 Csa-Chr5:31724175 Csa06g03736 Csa-Chr6:29814029 1.01E-98 dispersed
Csa06g00602 Csa-Chr6:5105163 Csa05g03218 Csa-Chr5:31724175 3.30E-46 dispersed
Csa06g03095 Csa-Chr6:26520126 Csa05g03218 Csa-Chr5:31724175 7.80E-44 dispersed
Csa05g03212 Csa-Chr5:31702786 Csa05g03218 Csa-Chr5:31724175 6.41E-36 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31887 PF01486 K-box 8.80E-27 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03218 K09264 - csv:101208072 437.958