Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g03229 ATGCAATCCACAACTGGTGCTGCTTCTACTGCTACTGCTACTGCTAGTAGTCGTACCTCCGCTGGCGGCGCCGGCCTTGCTCGCTTCCGCTCTGCTCCTGCTGCCTGGTTGGAAGCTCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCCCTGCTTGACTCAGCTTCTCGCCGCCAACTCCTCCGACCTCGATTCAGCTCCCGCGGATCACCCCTTGTTCGACCCCAATCCCTCTCCCGCCTTCCACAGGCAGAATAGCTCCCCACCTGAGTTTCTTGCTCCCTCTGGAATTGCTGAAGGATTTTACACCTCCTATCCTCTCAATTCCTCCCCTACTCTCGACATCTCTCCCACCTCCAAGCCATCTACAGATGTCGACGCCCAAAACTTCTTCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTGATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGAGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAAGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATCCAGGAACTTACGGAGCATCAGCGCAGGTGTAAATGCATGGTGAAAGAATAA 735 51.7 MQSTTGAASTATATASSRTSAGGAGLARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLAANSSDLDSAPADHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDISPTSKPSTDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCKCMVKE* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31836009 31840665 - CsaV3_5G040480.1 Csa05g03229 531616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g03229 244 MobiDBLite consensus disorder prediction 1 24 - -
Csa05g03229 244 Pfam Helix-loop-helix DNA-binding domain 179 225 IPR011598 GO:0046983
Csa05g03229 244 Coils Coil 214 234 - -
Csa05g03229 244 Gene3D - 175 244 IPR036638 GO:0046983
Csa05g03229 244 MobiDBLite consensus disorder prediction 1 21 - -
Csa05g03229 244 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 242 - -
Csa05g03229 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 241 IPR036638 GO:0046983
Csa05g03229 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 224 IPR011598 GO:0046983
Csa05g03229 244 PANTHER TRANSCRIPTION FACTOR BHLH80 21 242 - -
Csa05g03229 244 CDD bHLH_AtbHLH_like 179 231 IPR045239 -
Csa05g03229 244 MobiDBLite consensus disorder prediction 66 96 - -
Csa05g03229 244 SMART finulus 180 230 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03602 Csa-Chr3:32107556 Csa05g03229 Csa-Chr5:31836009 6.05E-39 dispersed
Csa05g03229 Csa-Chr5:31836009 Csa07g02038 Csa-Chr7:19779388 2.42E-33 dispersed
Csa05g03229 Csa-Chr5:31836009 Csa01g03148 Csa-Chr1:27559193 3.90E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31889 PF00010 HLH 3.00E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g03229 - - csv:101209773 436.417