Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00008 ATGGTAGCCGAAGCTGATATCAAATGCCCTAAATCCCTTCCTCTTATGAAAATCAACTACCATCTTCGCGTTGCCGATGATCGCGATCTTCAGACCGATTTGCCGCACCCTTCTTCCTCACCTGTCTTTTCCCAGGCAGTTAATTGTTCGGATATCGTTGAAGATGTGCATATAAAATCAGCTTCCATAGATTTTGTTCCAAACATTCGGTCTGGTAGCTATGCAGACATTGGAGCTCGGGATTCTATGGATGATGAACATGTCTGCATAGATGACCTGTCTGCCCATCTCCGATCTATGTTCAAATGTTCTATGCCTAAAGGTTTCTATGCCGTGTTTGATGGTCATGGAGGGCCTCATGCAGCTGCTTTTGTCAAGAGGAATGTCTTGAGACTATTCTTTGAAGATGCCGATTGGTTAAAAATGCAGGACATTGATTCTATTTCCCTAAAAGATTTGGAGAACTCTCATCGCAGAGCATTCCAACAGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCGTGTGGGACAACTGCATTGACGGCATTGGTTCTTGGGAGGCATTTGCTTGTTGCAAATGCTGGTGACTGCCGGGCAGTCCTATGTAGAAAAGGTATAGCAGTCCCAATGTCTGAAGATCACAGACCTTCTAATTTACTTGAGCTCAAGCGAGTGGAAGGAATGGGCGGGTTTGTAGATGACGGGTATGTTAATGGCTATATTTCAGTAACCAGGACCTTAGGGGATTGGGACTTGAAATTGCCAAATGTCTCCTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATATTAACAAACGACGATGAGTTCTTGATTCTCGGATGTGATGGAATTTGGGACGTTATGTCGAGCCAATATGCTGTAAGTCTCGTTCGACGAGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCAAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCGGATAATCTTACTGCAATCGTTATCTGCTTTTCTTCTTCCAGCTGTGCTTCTCAGCCGCGAATATGCAAGTCGTGTAATCTGACAGAAGATGCTACAAATAGATTGAGGAGCTTGTTAGAAGGTAACTGA 1119 44.77 MVAEADIKCPKSLPLMKINYHLRVADDRDLQTDLPHPSSSPVFSQAVNCSDIVEDVHIKSASIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHLRSMFKCSMPKGFYAVFDGHGGPHAAAFVKRNVLRLFFEDADWLKMQDIDSISLKDLENSHRRAFQQADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGIAVPMSEDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLPNVSSSPLIAEPQVEHVILTNDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVQEALRLNTSDNLTAIVICFSSSSCASQPRICKSCNLTEDATNRLRSLLEGN* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 57209 60216 - CsaV3_6G000080.1 Csa06g00008 531635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00008 372 Gene3D - 54 346 IPR036457 -
Csa06g00008 372 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 347 - -
Csa06g00008 372 SMART PP2C_SIG_2 85 340 IPR001932 -
Csa06g00008 372 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169
Csa06g00008 372 PANTHER PROTEIN PHOSPHATASE 2C 1 347 IPR015655 GO:0004722|GO:0006470
Csa06g00008 372 SUPERFAMILY PP2C-like 62 341 IPR036457 -
Csa06g00008 372 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Csa06g00008 372 SMART PP2C_4 60 338 IPR001932 -
Csa06g00008 372 CDD PP2Cc 69 340 IPR001932 -
Csa06g00008 372 Pfam Protein phosphatase 2C 78 332 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00008 Csa-Chr6:57209 Csa07g01941 Csa-Chr7:19183066 3.63E-123 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31890 PF00481 PP2C 1.80E-65 CL0238 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00008 K14803 - csv:101207477 749.584