Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00019 ATGGCACCTGATCTAAACACAACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGAATCTTGGTGGGGGTGTTTATTGTAATAGTCCTTGTGGTTCTATCAATATGTGTGGTTACTTCACGAAGAAAATCTAGAAGGGTAAGTGGGATGCTTCCTCTCAGCCGTATTTCCATAGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTTCAGCAATCCAGCACGGCCCTGTCCCCCACGATGGATTCGACACGGAATCGGAAAAAGTTCTTTTGTATTCAAACAAGGCATATAATTACAGCATATCAAGCTCAGTTGATAACACAGAGATATATGCTATTGGCTCTGGAGAAGGAAGCAAGGAAGCAAGTGTTTTGCATAGGCCTTCAGATTCAATACCACCGGATCCTTCGCCACTCGCCGGTCTGCCAGAATTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCAGTTTTCAAATGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTACCGAGGTCATCTGATCAATGGGACACCTGTGGCTGTCAAAAAACTTTTAAATGTAGGACAAGCGGAAAGGGAATTCAAGGTGGAAGTAGAAGCGTTTGGGCATGTGCGACACAAAAACTTAGTTCGGCTGCTGGGATACTGCATTGAAGGAACACATAGGATGCTAGTATATGAGTACGTAGATAATGGAAATCTAGAGCAGTGGCTTCACGGAGCCCTATGTCATCATGGATATCTCACTTGGGAAGCAAGAATCAGAATTCTCCTTGGTACTGCTAAGGCATTGGCATATTTGCATGAGGCAATCGAGCCAAAAATCGTGCATCGAGATATCAAGGCGAGCAACATATTGATTGATGATGAGTTTAATGCAAAGCTATCAGACTTTGGGCTAGCTAAATTACTCGGTTCTGGGAAGAGTCACATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGACTTCTAAATGAGAAGAGTGATGTTTATAGTTTTGGAGTGGTCCTTTTAGAAGCAATTACTGGAAGAGACCCCGTCGATTATAGTCGCCCAGCACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTGGGAAGCAAACGGTCAGAAGAGGTGGTAGATCCAAATATAGAAAGAAAACCATCAATTAGTGAACTGAAGCGAGTTCTCTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTTCTCGCATGCTTGAGTCTGAAGAATATCCAATTCGTCGACAGGACCGAAGACCCAGAAAGGGCCATGCTACTGCGACCAAAAAGGAACCTGAGAAACAGGAGAGAGGACCAAGACGACACAGATAA 1446 43.85 MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVIVLVVLSICVVTSRRKSRRVSGMLPLSRISIASKEIKEIGVDHVSAIQHGPVPHDGFDTESEKVLLYSNKAYNYSISSSVDNTEIYAIGSGEGSKEASVLHRPSDSIPPDPSPLAGLPEFSQLGWGHWFTLRDLELATMQFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLNVGQAEREFKVEVEAFGHVRHKNLVRLLGYCIEGTHRMLVYEYVDNGNLEQWLHGALCHHGYLTWEARIRILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGSGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYSRPAHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSISELKRVLLTALRCVDPDADKRPKMSQVSRMLESEEYPIRRQDRRPRKGHATATKKEPEKQERGPRRHR* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 132740 137920 - CsaV3_6G000190.1 Csa06g00019 531646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00019 481 MobiDBLite consensus disorder prediction 431 481 - -
Csa06g00019 481 ProSitePatterns Protein kinases ATP-binding region signature. 180 203 IPR017441 GO:0005524
Csa06g00019 481 MobiDBLite consensus disorder prediction 462 481 - -
Csa06g00019 481 SUPERFAMILY Protein kinase-like (PK-like) 158 451 IPR011009 -
Csa06g00019 481 Gene3D Phosphorylase Kinase; domain 1 155 248 - -
Csa06g00019 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Csa06g00019 481 MobiDBLite consensus disorder prediction 431 455 - -
Csa06g00019 481 PANTHER OS01G0323000 PROTEIN 2 474 - -
Csa06g00019 481 SMART serkin_6 174 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00019 481 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 2 474 - -
Csa06g00019 481 ProSiteProfiles Protein kinase domain profile. 174 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00019 481 Gene3D Transferase(Phosphotransferase) domain 1 249 459 - -
Csa06g00019 481 Pfam Protein kinase domain 175 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00019 481 CDD STKc_IRAK 180 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00019 Csa-Chr6:132740 Csa06g01183 Csa-Chr6:9996093 0 dispersed
Csa06g00019 Csa-Chr6:132740 Csa07g01177 Csa-Chr7:11510722 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78303 PF00069 Pkinase 4.90E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00019 - - csv:101204202 920.613