Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00023 ATGCGAATGGGAAAATACGAGCTGGGAAGAACAATAGGGCATGGCAGTTTTGGAAAGGTCAAATTTGCCATCAACTTTGAAACTGGTCAACCTTTTGCACTCAAGGTCCTTGACAAGTCCAAAATTATCGACCTCAAATTTACTCATCAGTTTAAAAGGGAAATACGAACCCTCAAACTTCTAAAGCATCCAAATATAGTTAGGCTATACGAGGTATTAGCTAGTAAAAGCAAAATTTACATGGTTCTTGAGTACGTAAACGGAGGAGAGTTGTACAACAGAATTGCAACGAAAGGGATGCTATCAGAAGCGGAAGGCAGAAAAATCTTTCAGCAGTTAATTGATGGTGTGAGTTACTGCCATGGCAAAGGGGTTTACCATAGGGATCTTAAGCTAGAGAACATACTTGTTGATGCTAGGGGCAGTATTAAGATATCGGATTTTGGATTAAGTGCGTTACACGAGCATTTAAGGGATGATGGTTTGCTTCATACAACATGTGGAAGCCCAAATTATGTGGCACCAGAAATTATTGGTAACAGAGGATATGATGGTGCAGCCTCAGACATATGGTCTTGTGGTGTTATTTTGTTTGTAATTCTTACTGGATTACTCCCTTTTGATGATACTAATTTGTGCGTCCTTTACCAAAAGATAATGAATGGAGAAATAAATGAAATACCAAAGTGGGTATCAGAAGGTGCCCAAAATTTAATTAGAAGGATTCTTGATCCTAACCCTAAGTCTAGAATAACAATGGCATCTATCAAAATGGATGATTGGTTTAGAAAGGATTACCATCCAACCTATGTTGATGATGAAGAAGAGGATATACTCACTAATAATGAGGTGGACTCCATAAATCAAGAGAGTTCAGATCAGTCTCCTCCTACAACCATAAATGCTTTTCAACTGATTGGAATGTTCTCATGCTTGGACCTTTCAGGTTTTTTTGAGAAAGAGGACATTTCTGAGAGGAAGATTAGGTTTACAACAAATCAGTACTCTACAAAAGAAGATATCTTCAAGCAGATTGAGTTTCTTGTAACTGAAATGGGGTTTCTAATCCATAAGAAGGAAGGAAAGTTGAAAATAATGAGAGAGCTGGAAAGGGGTGAGAATGGGGGTGTGACCACCATACTTTCAATATCAGCAGAGGTTTTCGAGATAAGTCCATCACTATATGTCGTGGAATTAAAGAAATTACATGGAGATTCTTCCTCGTTTAGACAGTTGTGCAACATTTTGTCAAGTGATTTGGGCATCCCTCCAGGCATCACTCGTGATGACATCCGATCAAGTGTCGTCTAG 1311 38.67 MRMGKYELGRTIGHGSFGKVKFAINFETGQPFALKVLDKSKIIDLKFTHQFKREIRTLKLLKHPNIVRLYEVLASKSKIYMVLEYVNGGELYNRIATKGMLSEAEGRKIFQQLIDGVSYCHGKGVYHRDLKLENILVDARGSIKISDFGLSALHEHLRDDGLLHTTCGSPNYVAPEIIGNRGYDGAASDIWSCGVILFVILTGLLPFDDTNLCVLYQKIMNGEINEIPKWVSEGAQNLIRRILDPNPKSRITMASIKMDDWFRKDYHPTYVDDEEEDILTNNEVDSINQESSDQSPPTTINAFQLIGMFSCLDLSGFFEKEDISERKIRFTTNQYSTKEDIFKQIEFLVTEMGFLIHKKEGKLKIMRELERGENGGVTTILSISAEVFEISPSLYVVELKKLHGDSSSFRQLCNILSSDLGIPPGITRDDIRSSVV* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 151726 157512 - CsaV3_6G000230.1 Csa06g00023 531650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00023 436 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Csa06g00023 436 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Csa06g00023 436 Pfam NAF domain 297 358 IPR004041 GO:0007165
Csa06g00023 436 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00023 436 CDD CIPK_C 301 420 - -
Csa06g00023 436 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Csa06g00023 436 SMART serkin_6 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00023 436 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Csa06g00023 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Csa06g00023 436 ProSiteProfiles Protein kinase domain profile. 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00023 436 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Csa06g00023 436 Gene3D Kinase associated domain 1, KA1 294 422 - -
Csa06g00023 436 PANTHER - 1 424 - -
Csa06g00023 436 PANTHER CBL-INTERACTING PROTEIN KINASE 21 1 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00023 Csa-Chr6:151726 Csa01g02575 Csa-Chr1:22662732 1.99E-149 dispersed
Csa06g00023 Csa-Chr6:151726 Csa06g00024 Csa-Chr6:162738 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78304 PF00069 Pkinase 7.00E-73 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00023 K07198 - csv:116404531 873.618